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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G398260
Reference: TK1151 Chr: Chr07 Coordinates: 100067052-100069088 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1464 bp · TkA07G398260|TK1151|cDNA

AAAAAGATCACCGAATAACGGACCTACTATGCACGCCACCCTCTTTCGCACGTGCTCACTGTACTGCGATTCGATTTATGGTTGTCCACGTGTCACCTCTTACCCAACTCCTTCCTCCAGGTGTTCCCCTTCTTCTTTCCTTTTCTATATCAACACCATCAAAATTCAAGACCAAATTCCCTACACGTTTGTTTCTCTCTTTCTCAATCACCCCCCGGAAATCCATGGAGACGGAAATACAGGCGAATTACTCATACATG...

CDS

Download CDS FASTA

1203 bp · TkA07G398260|TK1151|CDS

ATGGTTGTCCACGTGTCACCTCTTACCCAACTCCTTCCTCCAGGTGTTCCCCTTCTTCTTTCCTTTTCTATATCAACACCATCAAAATTCAAGACCAAATTCCCTACACGTTTGTTTCTCTCTTTCTCAATCACCCCCCGGAAATCCATGGAGACGGAAATACAGGCGAATTACTCATACATGGGACGGAATTTCAGCAACATCAGCCTCACCAACGATCACTCCGCGGCGTTCAGCGATTGTAATAGCGACCGGTCAGG...

Protein

Download Protein FASTA

400 aa · TkA07G398260|TK1151|PROTEIN

MVVHVSPLTQLLPPGVPLLLSFSISTPSKFKTKFPTRLFLSFSITPRKSMETEIQANYSYMGRNFSNISLTNDHSAAFSDCNSDRSGEFPTTSASKRLLLACATESSDDLIKQLVSDLDSDSIEDQKQAAMELRLLAKNKPENRVKIARAGAIRPLISLISSADSELQEHGVTAILNLSLCDENKEVLASSGAIRPLVRALKVGTPTAKENAACALLRLSQLEENKAAIGRSGAIPLLVDLLETGNFRGQKDASTALYSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G398260
TK1151 IDTkA07G398260
OH-1004 IDLXL04_030338
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G398260
LocationChr07:100067052-100069088 (+)
DescriptionSimilar to PUB4: U-box domain-containing protein 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g46510 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At2g23140 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At5g42340 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g54790 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At2g28830 Functions as an E3 ubiquitin ligase. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030338 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0031648 protein destabilization Biological Process
GO:0034614 cellular response to reactive oxygen species Biological Process
GO:0048364 root development Biological Process
GO:0048658 anther wall tapetum development Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0090333 regulation of stomatal closure Biological Process
GO:1904821 chloroplast disassembly Biological Process
GO:2000022 regulation of jasmonic acid mediated signaling pathway Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
KEGG gene cross-reference
ath:AT1G23030
ath:AT1G71020
ath:AT2G23140
ath:AT3G54790
ath:AT5G67340
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.346
Rank 1 · TkA07G398260 · TK1151
Nucleus0.312
Rank 2 · TkA07G398260 · TK1151
Plastid0.252
Rank 3 · TkA07G398260 · TK1151
Cell membrane0.108
Rank 4 · TkA07G398260 · TK1151
Mitochondrion0.051
Rank 5 · TkA07G398260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13513HEAT_EZ9-22 aa
PF14664RICTOR_N77-119 aa
PF17741DUF557897-188 aa
PF04208MtrA97-127 aa
PF11698V-ATPase_H_C105-177 aa
PF23628ARM_LIN_C107-260 aa
PF24768ARM_ARMC5108-293 aa
PF05804KAP109-242 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G398260PF13513HEAT_EZ9229.47.6
TkA07G398260PF14664RICTOR_N771190.001218.7
TkA07G398260PF17741DUF5578971880.1512.1
TkA07G398260PF04208MtrA971270.2411.8
TkA07G398260PF11698V-ATPase_H_C1051770.2112.5
TkA07G398260PF23628ARM_LIN_C1072602.7e-0730.6
TkA07G398260PF24768ARM_ARMC51082932e-1867.5
TkA07G398260PF05804KAP1092422.5e-0523.5
TkA07G398260PF25598ARM_PUB1133861.1e-2178.3
TkA07G398260PF28415SIL1_FES1_HPBP1_C1131657.5e-0729.6
TkA07G398260PF30746TMCO61211900.02214.2
TkA07G398260PF25571TPR_CCP1_N1331640.002217.9
TkA07G398260PF13513HEAT_EZ1401749.47.6
TkA07G398260PF00514Arm1411792.8e-36123.1
TkA07G398260PF30699ARM_GAC_21412030.006615.5
TkA07G398260PF14664RICTOR_N1492230.001218.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SNC6Arabidopsis thalianasp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 1345.200%Swiss-ProtLow
O22193Arabidopsis thalianasp|O22193|PUB4_ARATH U-box domain-containing protein 442.900%Swiss-ProtLow
Q681N2Arabidopsis thalianasp|Q681N2|PUB15_ARATH U-box domain-containing protein 1548.600%Swiss-ProtLow
Q8GWV5Arabidopsis thalianasp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 351.400%Swiss-ProtLow
Q9ZV31Arabidopsis thalianasp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 1256.700%Swiss-ProtLow

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