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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G398240
Reference: TK1151 Chr: Chr07 Coordinates: 100051952-100061600 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1160 bp · TkA07G398240|TK1151|cDNA

ATGATGTTATATTGTAGAACAAACTAGTAATTAAACGAAACAAACACCACCTCCTCTACCTACTACAATCACTTTTGCTTCTAGACCATCGATGGAGCTCGCTATTGTCAGAAGCAATCACAGGTCATCTCCGGCGACTTCTACACCGGAAATGGATCGCAAAATCTGGCGGAAGCTCCCCATCGAACTCCTCGAACGTATACTCTCTTTGTTACCTTTCAAAACCTTCTTATACCTCCGATCAACCTGCAAATACTTTA...

CDS

Download CDS FASTA

1050 bp · TkA07G398240|TK1151|CDS

ATGGAGCTCGCTATTGTCAGAAGCAATCACAGGTCATCTCCGGCGACTTCTACACCGGAAATGGATCGCAAAATCTGGCGGAAGCTCCCCATCGAACTCCTCGAACGTATACTCTCTTTGTTACCTTTCAAAACCTTCTTATACCTCCGATCAACCTGCAAATACTTTAGATCTCTTATCTTCTCTCCACTTTTCCTCTCGAAATATGCCAATTCGCTTTCACCTTCACCGTTTTCTTCGTTCATGTTACTATCTCATCC...

Protein

Download Protein FASTA

349 aa · TkA07G398240|TK1151|PROTEIN

MELAIVRSNHRSSPATSTPEMDRKIWRKLPIELLERILSLLPFKTFLYLRSTCKYFRSLIFSPLFLSKYANSLSPSPFSSFMLLSHPQSGNYLLYDTVLNTWRDINLPLIDSLTFTPLLCTASCLLCFSAVPDSSNSAFCLFNLLSRTTRLVKFPEYPFAFEYPTLITNSSGYHLFCLSSGSASSHLYAYVYDSRVRRWTRFDGFHRTLGDSYLQQGVLLNGSLYFVTREPFAVVNFDLHTGNWETSDVDLPEELTFVRL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G398240
TK1151 IDTkA07G398240
OH-1004 IDLXL04_030337
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.900
Protein coverage (%)TK1151 95.989 / OH-1004 87.240
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G398240
LocationChr07:100051952-100061600 (+)
DescriptionSimilar to At5g43190: F-box/kelch-repeat protein At5g43190
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g43190 F-box/kelch-repeat protein At5g43190. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030337 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009908 flower development Biological Process
GO:0009909 regulation of flower development Biological Process
GO:0010074 maintenance of meristem identity Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0010193 response to ozone Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
GO:0010928 regulation of auxin mediated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0030154 cell differentiation Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
KEGG gene cross-reference
ath:AT1G27340
ath:AT5G15710
ath:AT5G43190
osa:107277138
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.653
Rank 1 · TkA07G398240 · TK1151
Cytoplasm0.369
Rank 2 · TkA07G398240 · TK1151
Cell membrane0.066
Rank 3 · TkA07G398240 · TK1151
Endoplasmic reticulum0.058
Rank 4 · TkA07G398240 · TK1151
Lysosome / Vacuole0.025
Rank 5 · TkA07G398240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box26-66 aa
PF12937F-box-like26-64 aa
PF03478Beta-prop_KIB1-464-106 aa
PF24981Beta-prop_ATRN-LZTR189-107 aa
PF07646Kelch_293-106 aa
PF03478Beta-prop_KIB1-4120-308 aa
PF07734FBA_1125-244 aa
PF24981Beta-prop_ATRN-LZTR1172-225 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G398240PF00646F-box26662.5e-0834.2
TkA07G398240PF12937F-box-like26646.6e-0729.7
TkA07G398240PF03478Beta-prop_KIB1-4641060.0001522.1
TkA07G398240PF24981Beta-prop_ATRN-LZTR1891070.0002621.1
TkA07G398240PF07646Kelch_2931067.8e-0523.2
TkA07G398240PF03478Beta-prop_KIB1-41203080.0001522.1
TkA07G398240PF07734FBA_11252440.0001122.1
TkA07G398240PF24981Beta-prop_ATRN-LZTR11722250.0002621.1
TkA07G398240PF07646Kelch_21792017.8e-0523.2
TkA07G398240PF24681Kelch_KLHDC2_KLHL20_DRC71892040.002617.8
TkA07G398240PF07646Kelch_22212457.8e-0523.2
TkA07G398240PF25852DUF6242_C2223460.009316.3
TkA07G398240PF24981Beta-prop_ATRN-LZTR12333070.0002621.1
TkA07G398240PF12937F-box-like2502566.6e-0729.7
TkA07G398240PF13415Beta-prop_FBX422703060.1312.6
TkA07G398240PF24681Kelch_KLHDC2_KLHL20_DRC72713260.002617.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FHS6Arabidopsis thalianasp|Q9FHS6|FK119_ARATH F-box/kelch-repeat protein At5g4319046.800%Swiss-ProtMedium

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