RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G392970
Reference: TK1151 Chr: Chr07 Coordinates: 98675794-98678827 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1667 bp · TkA07G392970|TK1151|cDNA

CTTAGTAATGCTATTTTTTTGTAAAAAGTCCACATGGTAAATTAAAATTTTGTATAGATGTAAATGTTATAAGACACAAGTCACAAGGGCTGAAAGGGTTTTGTTGGTCTCTCTTCGTTTGCTGCCTGGTTATGGAAGATTTGCAGAGGCTACTGCTACGTGACCATGGTCTATCAGTTTCGACACTTCCGAATAAAGGTCGCTGCCTCTTCACTACTCGCGAATTCTCCCCAGGAGAAATTATATTATCCGAAGAACCT...

CDS

Download CDS FASTA

1443 bp · TkA07G392970|TK1151|CDS

ATGGAAGATTTGCAGAGGCTACTGCTACGTGACCATGGTCTATCAGTTTCGACACTTCCGAATAAAGGTCGCTGCCTCTTCACTACTCGCGAATTCTCCCCAGGAGAAATTATATTATCCGAAGAACCTTATGTTTCTGTACCAAACAAAAGTCCAGTGGAATCTCGATGCGATTGGTGCTTTACATCAAGTAATGTGAAGAGATGTTCATCTTGTCAAGTTGTATGGTACTGTGGAAGTAAGTGCCAGGCATCCGATTG...

Protein

Download Protein FASTA

480 aa · TkA07G392970|TK1151|PROTEIN

MEDLQRLLLRDHGLSVSTLPNKGRCLFTTREFSPGEIILSEEPYVSVPNKSPVESRCDWCFTSSNVKRCSSCQVVWYCGSKCQASDWKLHRLECQLLSKLEKNRIKSLTPSIRLMVKLYLRRKLQDEKVIPTSVTDNYNLVKELVSHISEVEETQLVLYAQMASLVNIILQWPTLNVKEIAENFSKLACNAHTICDSELIPLGTGLFPVISIINHSCSPNSVLVFEGRMATVRAMHQIPKGSEVLISYIETAGSTMTRQK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G392970
TK1151 IDTkA07G392970
OH-1004 IDLXL04_030283
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)91.100
Protein coverage (%)TK1151 100.000 / OH-1004 97.407
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G392970
LocationChr07:98675794-98678827 (+)
DescriptionSimilar to ASHR1: Histone-lysine N-methyltransferase ASHR1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g17900 Histone methyltransferase. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030283 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006334 nucleosome assembly Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006469 negative regulation of protein kinase activity Biological Process
GO:0008285 negative regulation of cell population proliferation Biological Process
GO:0018026 peptidyl-lysine monomethylation Biological Process
GO:0018027 peptidyl-lysine dimethylation Biological Process
GO:0032259 methylation Biological Process
GO:0033138 positive regulation of peptidyl-serine phosphorylation Biological Process
GO:0045184 establishment of protein localization Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
KEGG gene cross-reference
mmu:69726
xla:379943
xla:444415
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.521
Rank 1 · TkA07G392970 · TK1151
Cytoplasm0.460
Rank 2 · TkA07G392970 · TK1151
Mitochondrion0.110
Rank 3 · TkA07G392970 · TK1151
Cell membrane0.034
Rank 4 · TkA07G392970 · TK1151
Peroxisome0.025
Rank 5 · TkA07G392970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00856SET23-248 aa
PF23783Zn_ribbon_TiaS56-66 aa
PF01753zf-MYND57-94 aa
PF25122DUF781568-73 aa
PF24324MYND_ZMYND11_ZMYD870-94 aa
PF25122DUF781577-80 aa
PF21717DTX3L_a-b92-115 aa
PF21717DTX3L_a-b270-285 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G392970PF00856SET232481.4e-1145.5
TkA07G392970PF23783Zn_ribbon_TiaS56660.1512.5
TkA07G392970PF01753zf-MYND57945.8e-1039.8
TkA07G392970PF25122DUF781568730.1312.9
TkA07G392970PF24324MYND_ZMYND11_ZMYD870940.9610.3
TkA07G392970PF25122DUF781577800.1312.9
TkA07G392970PF21717DTX3L_a-b921150.04714.4
TkA07G392970PF21717DTX3L_a-b2702850.04714.4
TkA07G392970PF01753zf-MYND2712755.8e-1039.8
TkA07G392970PF08271Zn_Ribbon_TF2722750.01715.4
TkA07G392970PF23783Zn_ribbon_TiaS2912960.1512.5
TkA07G392970PF08271Zn_Ribbon_TF2933290.01715.4
TkA07G392970PF25122DUF78152943100.1312.9
TkA07G392970PF01753zf-MYND2993215.8e-1039.8
TkA07G392970PF23783Zn_ribbon_TiaS3103300.1512.5
TkA07G392970PF25122DUF78153143180.1312.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q7XJS0Arabidopsis thalianasp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR164.100%Swiss-ProtHigh

JBrowse

View in Genome Browser