TkA07G387810 | RubberDandelionOmics

Gene overview

TkA07G387810

Reference: TK1151 Chr: Chr07 Coordinates: 97263076-97268339 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1832 bp · TkA07G387810|TK1151|cDNA

CTTTTTAACAATTAATCGCAGCAACGTGCACGACGAATACTAGTTATCTCACTATTGTCTATCTTGTTTCCCCGTCTTAGCTACTTGCTACTTGTTTGGGGTTTTGATTTATAAAATTATTCGTTTCCAAATTTTTTTCACCTTTCGGGCTTTCACATAGAAAATGGAAGGGATGGGAACCCACAAAGAGGCACAATTTCATCTGACGATTTGCCCTACTATTCACCTTCACATTCATCACTGTGCGATTTCACTTACAG...

CDS

Download CDS FASTA

1224 bp · TkA07G387810|TK1151|CDS

ATGAAGATTGCAATAGAAGGATGCATGCATGGGGATCTGGACAATGTCTATTCAACTCTCTTACATCTACAACAAGTGGAAAACACAAAAATTGATCTTCTCATCTGTTGCGGTGATTTCCAGGCAGTTAGAAATGAGAAGGATCTAGAAAGCCTAAGTGTACCACCTAAATACAGAGCCATGAACTCTTTCTGGAAATACTACTCAGGAGAAAAAATAGCCCCTTTTCCAACCATATTCATTGGAGGAAATCACGAAGC...

Protein

Download Protein FASTA

407 aa · TkA07G387810|TK1151|PROTEIN

MKIAIEGCMHGDLDNVYSTLLHLQQVENTKIDLLICCGDFQAVRNEKDLESLSVPPKYRAMNSFWKYYSGEKIAPFPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGGIRIGGLSGIYKYRDYRSGHYERPPYNNSDIKSVYHVREYDVHKLMQIEEPVDIFVSHDWPLGITDHGNWKNLVREKPYFEKEIEDRTLGSKAGAELLEKIKPPYWFSAHLHCKFAAVVQHGDDEGRITKFLALDKCIPRRKFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G387810`
TK1151 ID	TkA07G387810
OH-1004 ID	LXL04_030245
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 92.500 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G387810

Location Chr07:97263076-97268339 (-)

Description Similar to DBR1: Lariat debranching enzyme

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g31770`	Cleaves the 2'-5' phosphodiester linkage at the branch point of lariat intron pre-mRNAs after splicing and converts them into linear molecules that are subsequently degraded.	An Arabidopsis RNA lariat debranching enzyme is essential for embryogenesis.2004 · DOI: 10.1074/jbc.m309106200

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0725300`	Cleaves the 2'-5' phosphodiester linkage at the branch point of lariat intron pre-mRNAs after splicing and converts them into linear molecules that are subsequently degraded.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030245 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000375 RNA splicing, via transesterification reactions Biological Process

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0005634 nucleus Cellular Component

GO:0008419 RNA lariat debranching enzyme activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G31770

xla:380060

xla:444127

xtr:394544

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.849

Rank 1 · TkA07G387810 · TK1151

Cytoplasm0.389

Rank 2 · TkA07G387810 · TK1151

Mitochondrion0.029

Rank 3 · TkA07G387810 · TK1151

Cell membrane0.022

Rank 4 · TkA07G387810 · TK1151

Endoplasmic reticulum0.014

Rank 5 · TkA07G387810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00149Metallophos1-229 aa

PF12850Metallophos_21-52 aa

PF05011DBR1243-364 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G387810	`PF00149`	Metallophos	1	229	7.9e-13	50.0
TkA07G387810	`PF12850`	Metallophos_2	1	52	0.0075	17.0
TkA07G387810	`PF05011`	DBR1	243	364	1.5e-29	103.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94K01`	Arabidopsis thaliana	sp\|Q94K01\|DBR1_ARATH Lariat debranching enzyme	68.900%	Swiss-Prot	High
`Q6AU07`	Oryza sativa subsp. japonica	sp\|Q6AU07\|DBR1_ORYSJ Lariat debranching enzyme	63.800%	Swiss-Prot	High

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