TkA07G337490 | RubberDandelionOmics

Gene overview

TkA07G337490

Reference: TK1151 Chr: Chr07 Coordinates: 84305090-84307381 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1377 bp · TkA07G337490|TK1151|cDNA

TTTGACTACCAAGTACCAACGATGGGTGTCCACATCAATATTCGCGAGCTTCATCACCATAACCGACCTTATGTATTTTTACCGCCAAAATGCTCATCCATCTCCCAACGAAATGTGTGTTTAAAGTTGCCAGTTCGTCTCCAATCCATCTCCCTGCGTGACTGGAGTTCACGATTTGTAGTTCGGAGACACATTTCGAATAATATTGTGAATCAGATTGATCGAAATGAGCCTCAAGAGTACACCCCAATATCATCTCA...

CDS

Download CDS FASTA

1236 bp · TkA07G337490|TK1151|CDS

ATGGGTGTCCACATCAATATTCGCGAGCTTCATCACCATAACCGACCTTATGTATTTTTACCGCCAAAATGCTCATCCATCTCCCAACGAAATGTGTGTTTAAAGTTGCCAGTTCGTCTCCAATCCATCTCCCTGCGTGACTGGAGTTCACGATTTGTAGTTCGGAGACACATTTCGAATAATATTGTGAATCAGATTGATCGAAATGAGCCTCAAGAGTACACCCCAATATCATCTCAGAATCCTGAAAAGAAGGCGGC...

Protein

Download Protein FASTA

411 aa · TkA07G337490|TK1151|PROTEIN

MGVHINIRELHHHNRPYVFLPPKCSSISQRNVCLKLPVRLQSISLRDWSSRFVVRRHISNNIVNQIDRNEPQEYTPISSQNPEKKAASNSILDVLQNANSILPQVVVISTIVAFIHPSSFTWFTSRYYGPALGFLMFAVGLNLREEDFTEAFKSPAPIFCGLFGQFAIKPLLGFLLGTLSTSLFRLPSSLSDGIMLTSCVNGAQLSNYATFLTDPTMAPLSIVMTSLSTASAVFFTPFLSLLLLGKRLNVDVHGMVSNIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G337490`
TK1151 ID	TkA07G337490
OH-1004 ID	LXL04_029699
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G337490

Location Chr07:84305090-84307381 (+)

Description Similar to BASS6: Probable sodium/metabolite cotransporter BASS6, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g22840`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release
`At4g12030`	Plastidic transporter involved in the biosynthesis of aliphatic glucosinolates by translocating the biosynthetic intermediates of Met-derived glucosinolates across chloroplast membranes.	The plastidic bile acid transporter 5 is required for the biosynthesis of methionine-derived glucosinolates in Arabidopsis thaliana.2009 · DOI: 10.1105/tpc.109.066399 Arabidopsis bile acid:sodium symporter family protein 5 is involved in methionine-derived glucosinolate biosynthesis.2009 · DOI: 10.1093/pcp/pcp110

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8BDK4`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release
`Os09g0520600`	May function as sodium-coupled metabolite transporter across the chloroplast envelope.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029699 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0019761 glucosinolate biosynthetic process Biological Process

GO:0033506 glucosinolate biosynthetic process from homomethionine Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

GO:0008028 monocarboxylic acid transmembrane transporter activity Molecular Function

GO:0043879 glycolate transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G25410

ath:AT4G12030

ath:AT4G22840

dosa:Os09g0520600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.974

Rank 1 · TkA07G337490 · TK1151

Mitochondrion0.023

Rank 2 · TkA07G337490 · TK1151

Cell membrane0.016

Rank 3 · TkA07G337490 · TK1151

Nucleus0.016

Rank 4 · TkA07G337490 · TK1151

Endoplasmic reticulum0.014

Rank 5 · TkA07G337490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01758SBF105-117 aa

PF01758SBF130-313 aa

PF20554DUF6766310-374 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G337490	`PF01758`	SBF	105	117	1.1e-42	146.6
TkA07G337490	`PF01758`	SBF	130	313	1.1e-42	146.6
TkA07G337490	`PF20554`	DUF6766	310	374	0.13	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VYY4`	Arabidopsis thaliana	sp\|Q8VYY4\|BASS6_ARATH Probable sodium/metabolite cotransporter BASS6, chloroplastic	56.800%	Swiss-Prot	High
`F4JPW1`	Arabidopsis thaliana	sp\|F4JPW1\|BASS5_ARATH Probable sodium/metabolite cotransporter BASS5, chloroplastic	60.700%	Swiss-Prot	High
`B8BDK4`	Oryza sativa subsp. indica	sp\|B8BDK4\|BASS5_ORYSI Probable sodium/metabolite cotransporter BASS5, chloroplastic	60.700%	Swiss-Prot	High
`Q650U0`	Oryza sativa subsp. japonica	sp\|Q650U0\|BASS5_ORYSJ Probable sodium/metabolite cotransporter BASS5, chloroplastic	60.700%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card