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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G252000
Reference: TK1151 Chr: Chr07 Coordinates: 62848104-62854177 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2591 bp · TkA07G252000|TK1151|cDNA

ACAAAGATATCAAAACCACATAAATATCCAAAATTAGACCAGGATGTACCACCTGAAACCAAAATCAGATGATTTTGACAATTACGCTATCACAATTCACAAGGACTATTCTTGCAATTTAGTATGAACTCTTACATAAATCCGAATTTGTAACCCTTTAGTCGGTTGATTTATTGAACCGGTCCGCTTTGTTCCGGTTGGGCTAAATGCAAGTATTTGTATGCCTTTCGCCTCGCACTTGACACCCAGAAAATGGCGTC...

CDS

Download CDS FASTA

1908 bp · TkA07G252000|TK1151|CDS

ATGGCGTCTGTGTCTTCCTTATCCATGTGCTTCTTTTCTGCTCATGCCCAAGCTCGCTCCAACAAACCTCGTAAACAGCTTGTCCCCAAGAACCCTAATGCCAAAAAGTCCAACAGCATTACCACCCCACGTCCGCAGTCCCTTTTCTCCCTCTCCGGCGGCCAAGCTACAACCTACACTCGCCTGCCTCCCAAAGATGATGAATTCTCCGATTCCTTTGCAGAGATCAAGCTGTCCGATTTGGCAACACTGATGCATAT...

Protein

Download Protein FASTA

635 aa · TkA07G252000|TK1151|PROTEIN

MASVSSLSMCFFSAHAQARSNKPRKQLVPKNPNAKKSNSITTPRPQSLFSLSGGQATTYTRLPPKDDEFSDSFAEIKLSDLATLMHMQKKPSSRSEDKIENDAELSDTEEDAGFDYGKFELFEVSSDEEIDGDEFEEDDLALENKGEDELGFEYKGEGEEEQEDEREKEKGVPAVMRCFDRAKIYVRSGDGGNGVVAFRREKFVPLGGPSGGDGGRGGNVYMEVDSSMNSLLPFRNSIHFRAGRGSHGQGSKMNGAKGDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G252000
TK1151 IDTkA07G252000
OH-1004 IDLXL04_028935
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G252000
LocationChr07:62848104-62854177 (+)
DescriptionSimilar to OBGL: GTP-binding protein OBGC, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g18570 GTP-binding protein involved in membrane biogenesis and protein synthesis in chloroplast.
Arabidopsis OBG-like GTPase (AtOBGL) is localized in chloroplasts and has an essential function in embryo development.2009 · DOI: 10.1093/mp/ssp073

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2YPR8 Probable GTP-binding protein that may play a role in chloroplast development. No verified direct reference in this release
Os07g0669200 Probable GTP-binding protein that plays a crucial role in chloroplast development and is required for leaf greening during plant growth. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028935 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006364 rRNA processing Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010027 thylakoid membrane organization Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009706 chloroplast inner membrane Cellular Component
KEGG gene cross-reference
ath:AT5G18570
csc:Csac_1571
dosa:Os07g0669200
sth:STH432
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.894
Rank 1 · TkA07G252000 · TK1151
Mitochondrion0.095
Rank 2 · TkA07G252000 · TK1151
Nucleus0.056
Rank 3 · TkA07G252000 · TK1151
Cytoplasm0.040
Rank 4 · TkA07G252000 · TK1151
Cell membrane0.017
Rank 5 · TkA07G252000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01926MMR_HSR174-89 aa
PF19993DO-GTPase2100-128 aa
PF01018GTP1_OBG180-337 aa
PF00009GTP_EFTU339-362 aa
PF01926MMR_HSR1341-460 aa
PF02421FeoB_N341-500 aa
PF19993DO-GTPase2341-357 aa
PF03193RsgA_GTPase343-359 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G252000PF01926MMR_HSR174893.2e-2382.7
TkA07G252000PF19993DO-GTPase21001280.1212.7
TkA07G252000PF01018GTP1_OBG1803372.9e-54183.6
TkA07G252000PF00009GTP_EFTU3393620.01415.7
TkA07G252000PF01926MMR_HSR13414603.2e-2382.7
TkA07G252000PF02421FeoB_N3415002.3e-0937.7
TkA07G252000PF19993DO-GTPase23413570.1212.7
TkA07G252000PF03193RsgA_GTPase3433590.01615.8
TkA07G252000PF03029ATP_bind_13433650.3811.2
TkA07G252000PF10662PduV-EutP4445000.3211.5
TkA07G252000PF03193RsgA_GTPase4485000.01615.8
TkA07G252000PF03029ATP_bind_14504710.3811.2
TkA07G252000PF00009GTP_EFTU4525060.01415.7
TkA07G252000PF09269DUF19675426117.9e-2174.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L7L0Arabidopsis thalianasp|Q8L7L0|OBGC_ARATH GTP-binding protein OBGC, chloroplastic59.900%Swiss-ProtHigh
A2YPR8Oryza sativa subsp. indicasp|A2YPR8|OBGC1_ORYSI Probable GTP-binding protein OBGC1, chloroplastic70.600%Swiss-ProtHigh
Q0D3S3Oryza sativa subsp. japonicasp|Q0D3S3|OBGC1_ORYSJ Probable GTP-binding protein OBGC1, chloroplastic70.600%Swiss-ProtHigh

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