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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G151610
Reference: TK1151 Chr: Chr07 Coordinates: 38992529-38996358 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1822 bp · TkA07G151610|TK1151|cDNA

CGTTGACCACCGGATTTTAGACTAGTTATTCTATGGTGAGTCGTGACTACCGTTGCAAAAACCTTACATGTTTCCGGCTGAGTATGGAACCGCGATTTTCTTTTCTATTTGCAGAACTGAATTCAAAAGCAACCCTAATTTGCAACGTAATGAAAACATAAAACCTTGTTTGCCCTTTCCGGCACACACAGTCACAGAGAGCTGCAAAAGCCCTCTCGTTGTCGATTGTCATGCTCCATTTGGACACCAAAAACCCTAGT...

CDS

Download CDS FASTA

1239 bp · TkA07G151610|TK1151|CDS

ATGCTCCATTTGGACACCAAAAACCCTAGTAATTCTGACACTACTACGTCCTATAAATCGCTACTTGCATTCAAGCCTCGCCAAGTTCTTCTCGCTAAGCATAATCCAAGAGGTACGATGACTGGTTCATCTTTGAAGGAGGAAAATAGCAGCAAAATCACATCTTTAACCCCCGAATTAAAAGCAACTCTTCATCAATCTATACTTGATTACTTCCATCGCAACGGGTTCTCCAAAACCCTCAAACGATTTCAGTCAGA...

Protein

Download Protein FASTA

412 aa · TkA07G151610|TK1151|PROTEIN

MLHLDTKNPSNSDTTTSYKSLLAFKPRQVLLAKHNPRGTMTGSSLKEENSSKITSLTPELKATLHQSILDYFHRNGFSKTLKRFQSEASVQSDAQKASLVHLEDMICKFDASNADSNKTANEEITTNKKKKKGAIESDNSAIKDQLQVTDEKMFIFGKNGGQISQDNIVNELETKPKKKKKTKNNFSSSCQVEEPKPDFVKMPLNDTINGLKIENSTEKVAVKEKKKKKKKSITDSGDIEKECIEADDIKTGEKSSKKRK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G151610
TK1151 IDTkA07G151610
OH-1004 IDLXL04_028396
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G151610
LocationChr07:38992529-38996358 (-)
DescriptionSimilar to NOLC1: Nucleolar and coiled-body phosphoprotein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028396 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000278 mitotic cell cycle Biological Process
GO:0006364 rRNA processing Biological Process
GO:0006417 regulation of translation Biological Process
GO:0006913 nucleocytoplasmic transport Biological Process
GO:0007000 nucleolus organization Biological Process
GO:0008284 positive regulation of cell population proliferation Biological Process
GO:0033979 box H/ACA sno(s)RNA metabolic process Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0042306 regulation of protein import into nucleus Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0071901 negative regulation of protein serine/threonine kinase activity Biological Process
GO:0001650 fibrillar center Cellular Component
KEGG gene cross-reference
hsa:9221
mmu:70769
rno:64896
sce:YKR092C
spo:2539687
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.964
Rank 1 · TkA07G151610 · TK1151
Cytoplasm0.101
Rank 2 · TkA07G151610 · TK1151
Cell membrane0.019
Rank 3 · TkA07G151610 · TK1151
Mitochondrion0.011
Rank 4 · TkA07G151610 · TK1151
Endoplasmic reticulum0.010
Rank 5 · TkA07G151610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26038Dimer_MINDY4_N2-22 aa
PF27600DCAF1_helical53-139 aa
PF24951LisH_PAC164-92 aa
PF30097LisH_SSDP65-94 aa
PF08513LisH67-88 aa
PF26038Dimer_MINDY4_N70-93 aa
PF09701Cas_Cmr573-130 aa
PF05022SRP40_C126-132 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G151610PF26038Dimer_MINDY4_N2220.1713.1
TkA07G151610PF27600DCAF1_helical531390.06613.4
TkA07G151610PF24951LisH_PAC164922e-0937.8
TkA07G151610PF30097LisH_SSDP65940.0116.9
TkA07G151610PF08513LisH67880.01316.2
TkA07G151610PF26038Dimer_MINDY4_N70930.1713.1
TkA07G151610PF09701Cas_Cmr5731300.1712.8
TkA07G151610PF05022SRP40_C1261321.5e-2796.9
TkA07G151610PF26038Dimer_MINDY4_N1721880.1713.1
TkA07G151610PF05022SRP40_C1771831.5e-2796.9
TkA07G151610PF05022SRP40_C2232401.5e-2796.9
TkA07G151610PF26038Dimer_MINDY4_N2232260.1713.1
TkA07G151610PF09701Cas_Cmr52252290.1712.8
TkA07G151610PF05022SRP40_C2572721.5e-2796.9
TkA07G151610PF26038Dimer_MINDY4_N2622890.1713.1
TkA07G151610PF05022SRP40_C2802951.5e-2796.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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