Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1239 bp · LXL04_028396|LXL04_028396|OH1004|cDNA
ATGCTCCATTTGGACACCAAAAACCCTAGTAATTCTGACACTACTACGTCCTATAAATCGCTACTTGCATTCAAGCCTCGCCAAGTTCTTCTCGCTAAGCATAATCCAAGAGGTACGATGACTGGTTCATCTTTGAAGGAGGAAAATAGCAGCAAAATCACATCTTTAACCCCCGAATTAAAAGCAACTCTTCATCAATCTATACTTGATTACTTCCATCGCAACGGGTTCTCCAAAACCCTCAAACGATTTCAGTCAGA...
1239 bp · LXL04_028396|LXL04_028396|OH1004|CDS
ATGCTCCATTTGGACACCAAAAACCCTAGTAATTCTGACACTACTACGTCCTATAAATCGCTACTTGCATTCAAGCCTCGCCAAGTTCTTCTCGCTAAGCATAATCCAAGAGGTACGATGACTGGTTCATCTTTGAAGGAGGAAAATAGCAGCAAAATCACATCTTTAACCCCCGAATTAAAAGCAACTCTTCATCAATCTATACTTGATTACTTCCATCGCAACGGGTTCTCCAAAACCCTCAAACGATTTCAGTCAGA...
Protein
Download Protein FASTA412 aa · LXL04_028396|LXL04_028396|OH1004|PROTEIN
MLHLDTKNPSNSDTTTSYKSLLAFKPRQVLLAKHNPRGTMTGSSLKEENSSKITSLTPELKATLHQSILDYFHRNGFSKTLKRFQSEASVQSDAQKASLVHLEDMICKFDASNADSNKTANEEITTNKKKKKGAIESDNSAIKDQLQVTDEKMFIFGKNGGQISQDNIVNELETKPKKKKKTKNNFSSSCQVEEPKPDFVKMPLNDTINGLKIENSTEKVAVKEKKKKKKKSITDSGDIEKECIEADDIKTGEKSSKKRK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_028396 |
|---|---|
| TK1151 ID | TkA07G151610 |
| OH-1004 ID | LXL04_028396 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_028396 |
|---|---|
| Location | Chr06:40429271-40432515 (-) |
| Description | Similar to NOLC1: Nucleolar and coiled-body phosphoprotein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000278 mitotic cell cycle Biological Process GO:0006364 rRNA processing Biological Process GO:0006417 regulation of translation Biological Process GO:0006913 nucleocytoplasmic transport Biological Process GO:0007000 nucleolus organization Biological Process GO:0008284 positive regulation of cell population proliferation Biological Process GO:0033979 box H/ACA sno(s)RNA metabolic process Biological Process GO:0042254 ribosome biogenesis Biological Process GO:0042306 regulation of protein import into nucleus Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0071901 negative regulation of protein serine/threonine kinase activity Biological Process GO:0001650 fibrillar center Cellular Component |
| KEGG gene cross-reference | hsa:9221 mmu:70769 rno:64896 sce:YKR092C spo:2539687 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24951.4LisH_PAC164-92 aaPF05022.18SRP40_C334-406 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_028396 | PF24951.4 | LisH_PAC1 | 64 | 92 | 2e-09 | 37.8 |
| LXL04_028396 | PF05022.18 | SRP40_C | 334 | 406 | 1.5e-27 | 96.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.