TkA07G125550 | RubberDandelionOmics

Gene overview

TkA07G125550

Reference: TK1151 Chr: Chr07 Coordinates: 32511444-32512517 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

999 bp · TkA07G125550|TK1151|cDNA

ATGGGGAAGACGACCAAATGGATCAAGAATTTGCTGGCCGGAAAGAAAGACAGAACCAACAACCAGCCACCAATCGCCACACAAGATCGTAACCCACTAACCCCCATCTCCACCCATCCCACAACTCCCAAAGAGAAAAGCAGATGGAGCTTCCGGCGATCATCCGCCACCTCCACCACCCCTCCCAACTTCACCACCATTGCATCGACTACACCCACCTCTTTCCAACCTGAGAAGTTCGAACAAAAGAGCCAGGCTCC...

CDS

Download CDS FASTA

999 bp · TkA07G125550|TK1151|CDS

ATGGGGAAGACGACCAAATGGATCAAGAATTTGCTGGCCGGAAAGAAAGACAGAACCAACAACCAGCCACCAATCGCCACACAAGATCGTAACCCACTAACCCCCATCTCCACCCATCCCACAACTCCCAAAGAGAAAAGCAGATGGAGCTTCCGGCGATCATCCGCCACCTCCACCACCCCTCCCAACTTCACCACCATTGCATCGACTACACCCACCTCTTTCCAACCTGAGAAGTTCGAACAAAAGAGCCAGGCTCC...

Protein

Download Protein FASTA

332 aa · TkA07G125550|TK1151|PROTEIN

MGKTTKWIKNLLAGKKDRTNNQPPIATQDRNPLTPISTHPTTPKEKSRWSFRRSSATSTTPPNFTTIASTTPTSFQPEKFEQKSQAPAMATPQEEEATMTRIQSVFRSYLARKALSALRGLVKLQALVRGHLVRKQAAETLRSMHALVMVQARARAQRRIKELMEENIKIVEMDMCHARPFVALEPSENGQLYYSKPDHSRPHSTYSISDYIETINDFEVCPSYMANTQSSRAKARSQSAPKQRSTDQTLAHRRQSTSSI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G125550`
TK1151 ID	TkA07G125550
OH-1004 ID	LXL04_028152
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G125550

Location Chr07:32511444-32512517 (-)

Description Similar to IQD20: Protein IQ-DOMAIN 20

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14750`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At4g23060`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At1g01110`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At4g29150`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At3g49260`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	Calcium channels activated by hydrogen peroxide mediate abscisic acid signalling in guard cells.2000 · DOI: 10.1038/35021067 A defined range of guard cell calcium oscillation parameters encodes stomatal movements.2001 · DOI: 10.1038/35082575 CO(2) signaling in guard cells: calcium sensitivity response modulation, a Ca(2+)-independent phase, and CO(2) insensitivity of the gca2 mutant.2006 · DOI: 10.1073/pnas.0602225103 Combinatorial interactions of multiple cis-elements regulating the induction of the Arabidopsis XERO2 dehydrin gene by abscisic acid and cold.2008 · DOI: 10.1111/j.1365-313x.2007.03399.x Calcium elevation-dependent and attenuated resting calcium-dependent abscisic acid induction of stomatal closure and abscisic acid-induced enhancement of calcium sensitivities of S-type anion and inward-rectifying K channels in Arabidopsis guard cells.2009 · DOI: 10.1111/j.1365-313x.2009.03872.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028152 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010091 trichome branching Biological Process

GO:0051592 response to calcium ion Biological Process

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016604 nuclear body Cellular Component

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT1G51960

ath:AT3G16490

ath:AT4G14750

ath:AT5G07240

ath:AT5G62070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.421

Rank 1 · TkA07G125550 · TK1151

Nucleus0.366

Rank 2 · TkA07G125550 · TK1151

Cell membrane0.365

Rank 3 · TkA07G125550 · TK1151

Endoplasmic reticulum0.044

Rank 4 · TkA07G125550 · TK1151

Plastid0.030

Rank 5 · TkA07G125550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13178DUF400556-72 aa

PF00612IQ99-114 aa

PF00612IQ122-136 aa

PF00612IQ148-157 aa

PF13178DUF4005202-271 aa

PF00612IQ271-278 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G125550	`PF13178`	DUF4005	56	72	2.1e-12	48.2
TkA07G125550	`PF00612`	IQ	99	114	2.7e-06	27.4
TkA07G125550	`PF00612`	IQ	122	136	2.7e-06	27.4
TkA07G125550	`PF00612`	IQ	148	157	2.7e-06	27.4
TkA07G125550	`PF13178`	DUF4005	202	271	2.1e-12	48.2
TkA07G125550	`PF00612`	IQ	271	278	2.7e-06	27.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A0A1P8B590`	Arabidopsis thaliana	sp\|A0A1P8B590\|IQD19_ARATH Protein IQ-DOMAIN 19	39.400%	Swiss-Prot	Medium
`Q2NNE0`	Arabidopsis thaliana	sp\|Q2NNE0\|IQD22_ARATH Protein IQ-DOMAIN 22	60.300%	Swiss-Prot	Low
`Q9MAM4`	Arabidopsis thaliana	sp\|Q9MAM4\|IQD18_ARATH Protein IQ-DOMAIN 18	70.700%	Swiss-Prot	Low
`F4JMV6`	Arabidopsis thaliana	sp\|F4JMV6\|IQD25_ARATH Protein IQ-DOMAIN 25	66.700%	Swiss-Prot	Low
`Q9ASW3`	Arabidopsis thaliana	sp\|Q9ASW3\|IQD21_ARATH Protein IQ-DOMAIN 21	54.900%	Swiss-Prot	Low

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