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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G108960
Reference: TK1151 Chr: Chr07 Coordinates: 28239839-28242503 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1564 bp · TkA07G108960|TK1151|cDNA

GAAGATACTCGATACCAAATTATCCCTCGCTACCCTCGTCCCTTCATACGTCACCTTTTAGGGGAATCAATGCTTCCCTTCGGACAATGACAAATTCACACACACACTTCTGGAACTGATATACTCCATACACACAGAATCACAATAAAATCGAAGGATACTTCGGTGTTTATGTGTGTAATTTTGTGAAAAAGGGAGATGGTGAGGATTTTACCGATGGCGTCGACCATTCGTCCGTCGCTCTCATCCTTAGCCACTAC...

CDS

Download CDS FASTA

720 bp · TkA07G108960|TK1151|CDS

ATGAAGCTCTTGCGAAAAAGAGACATCCCTGAAGAAAGATACACCAATGCATTTCTTGGATATGGACCAGAAGATTCTCACTTTGTTATTGAACTCACATACAACTATGGAGTTGACAAATATGACATCGGATCTGCTTTTGGTCATTTTGGCATTGCTGTTGATGATGTTGCTAAAACAGTTGATCTGATAAAGGCAAAGGGTGGGACTGTAACTAGAGAACCGGGTCCGGTCAAAGGTGGAAAGTCAATCATTGCATT...

Protein

Download Protein FASTA

239 aa · TkA07G108960|TK1151|PROTEIN

MKLLRKRDIPEERYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGSAFGHFGIAVDDVAKTVDLIKAKGGTVTREPGPVKGGKSIIAFVEDPDGYKFELIERGPTPEPLCQVMLRVGDLDRAITFYEKAFGMELLRRRDNPEYKYTIAMMGYGPEDKSAVLELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAEAVKLFGGKITREPGPLPGISTKITACLDPDGWKTVFVDNIDFVKELE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G108960
TK1151 IDTkA07G108960
OH-1004 IDLXL04_027954
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 66.574
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G108960
LocationChr07:28239839-28242503 (+)
DescriptionSimilar to At1g67280: Probable lactoylglutathione lyase, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g67280 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. No verified direct reference in this release
At1g11840 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0191700 Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione (By similarity).
A unique Ni2+ -dependent and methylglyoxal-inducible rice glyoxalase I possesses a single active site and functions in abiotic stress response.2014 · DOI: 10.1111/tpj.12521
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027954 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006970 response to osmotic stress Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0009409 response to cold Biological Process
GO:0009651 response to salt stress Biological Process
GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G11840
ath:AT1G67280
dosa:Os08g0191700
osa:4344858
sfl:SF1678
sfx:S1810
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.774
Rank 1 · TkA07G108960 · TK1151
Nucleus0.220
Rank 2 · TkA07G108960 · TK1151
Cell membrane0.074
Rank 3 · TkA07G108960 · TK1151
Mitochondrion0.071
Rank 4 · TkA07G108960 · TK1151
Endoplasmic reticulum0.068
Rank 5 · TkA07G108960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13669Glyoxalase_49-83 aa
PF21701GLOD4_C11-94 aa
PF22984RM6_Med1414-43 aa
PF00903Glyoxalase22-98 aa
PF18029Glyoxalase_649-99 aa
PF22677Ble-like_N49-59 aa
PF13468Glyoxalase_349-72 aa
PF22659YycE-like_C88-96 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G108960PF13669Glyoxalase_49831e-1042.6
TkA07G108960PF21701GLOD4_C11945.4e-0524.1
TkA07G108960PF22984RM6_Med1414430.1512.9
TkA07G108960PF00903Glyoxalase22986.2e-37127.4
TkA07G108960PF18029Glyoxalase_649991.2e-0733.1
TkA07G108960PF22677Ble-like_N49590.002818.1
TkA07G108960PF13468Glyoxalase_349720.09813.4
TkA07G108960PF22659YycE-like_C88960.07813.7
TkA07G108960PF00903Glyoxalase1102266.2e-37127.4
TkA07G108960PF13669Glyoxalase_41102041e-1042.6
TkA07G108960PF18029Glyoxalase_61102231.2e-0733.1
TkA07G108960PF22677Ble-like_N1111350.002818.1
TkA07G108960PF21701GLOD4_C1172345.4e-0524.1
TkA07G108960PF22984RM6_Med141421650.1512.9
TkA07G108960PF13468Glyoxalase_31661980.09813.4
TkA07G108960PF22659YycE-like_C2192290.07813.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W593Arabidopsis thalianasp|Q8W593|LGUC_ARATH Probable lactoylglutathione lyase, chloroplastic92.500%Swiss-ProtHigh
O65398Arabidopsis thalianasp|O65398|GLX1_ARATH Lactoylglutathione lyase GLX174.900%Swiss-ProtHigh
Q948T6Oryza sativa subsp. japonicasp|Q948T6|LGUL_ORYSJ Lactoylglutathione lyase72.500%Swiss-ProtHigh

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