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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G099510
Reference: TK1151 Chr: Chr07 Coordinates: 25957660-25960272 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

764 bp · TkA07G099510|TK1151|cDNA

TTTACTCCAAATAATAAACCTAAACCTAAAAAACAATCGCGGCTCCATCTCTCCATCTCTCCAGTTTTCGAGTTTTCTCCGTTCGACTCTCCGGGTCTCCGTCTCTTGCTCTCTATCGGCAACTCCAAACCTCCAACTCCGCTGCCGGCGTCTCACTGGCCCTGGTCCACTGGTCGCACTTCATCTCCAACACACTTCGTCTCCGCCGGTCTCATCTCTTCAGTTTCCGACTTTTCTCCGATCGACTCTCCTGGTCTCCG...

CDS

Download CDS FASTA

375 bp · TkA07G099510|TK1151|CDS

TTTACTCCAAATAATAAACCTAAACCTAAAAAACAATCGCGGCTCCATCTCTCCATCTCTCCAGTTTTCGAGTTTTCTCCGTTCGACTCTCCGGGTCTCCGTCTCTTGCTCTCTATCGGCAACTCCAAACCTCCAACTCCGCTGCCGGCGTCTCACTGGCCCTGGTCCACTGGTCGCACTTCATCTCCAACACACTTCGTCTCCGCCGGTCTCATCTCTTCAGTTTCCGACTTTTCTCCGATCGACTCTCCTGGTCTCCG...

Protein

Download Protein FASTA

124 aa · TkA07G099510|TK1151|PROTEIN

FTPNNKPKPKKQSRLHLSISPVFEFSPFDSPGLRLLLSIGNSKPPTPLPASHWPWSTGRTSSPTHFVSAGLISSVSDFSPIDSPGLRLLLSIGNSKAPTPLLAGPLVALHLQHTSSPPVASLHL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G099510
TK1151 IDTkA07G099510
OH-1004 IDLXL04_021175
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)64.100
Protein coverage (%)TK1151 49.194 / OH-1004 8.997
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G099510
LocationChr07:25957660-25960272 (+)
DescriptionSimilar to SPY: Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021175 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009736 cytokinin-activated signaling pathway Biological Process
GO:0009740 gibberellic acid mediated signaling pathway Biological Process
GO:0009908 flower development Biological Process
GO:0009938 negative regulation of gibberellic acid mediated signaling pathway Biological Process
GO:0030154 cell differentiation Biological Process
GO:0036066 protein O-linked glycosylation via fucose Biological Process
GO:0048511 rhythmic process Biological Process
GO:2000377 regulation of reactive oxygen species metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016262 protein N-acetylglucosaminyltransferase activity Molecular Function
GO:0046922 peptide-O-fucosyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT3G11540
dosa:Os08g0559300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.517
Rank 1 · TkA07G099510 · TK1151
Cytoplasm0.498
Rank 2 · TkA07G099510 · TK1151
Mitochondrion0.056
Rank 3 · TkA07G099510 · TK1151
Endoplasmic reticulum0.049
Rank 4 · TkA07G099510 · TK1151
Cell membrane0.044
Rank 5 · TkA07G099510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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