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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G097870
Reference: TK1151 Chr: Chr07 Coordinates: 25541202-25543617 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1578 bp · TkA07G097870|TK1151|cDNA

ATGGACTCCATTTTCAATCTTGAAGAAACTGAAAGATCCAGTAGACTTCGACAACTCATGGACTCGTTTGATTTCACTTATGTCTGCCTCTGGTCTCACCTTCCAAATCCTTCCAATTGTTTGATATTCATTGACGGAACTTACAAAGAAGAAAACAAGCAAGAGAGTTCATCATCTGGGAGCCCTGCCATGAGGTCTTTTGTGGAGTACCAGAAGTCAATCTTCTTGATTATTAATGATTACAGAGTAGGAGTTCCAGG...

CDS

Download CDS FASTA

1578 bp · TkA07G097870|TK1151|CDS

ATGGACTCCATTTTCAATCTTGAAGAAACTGAAAGATCCAGTAGACTTCGACAACTCATGGACTCGTTTGATTTCACTTATGTCTGCCTCTGGTCTCACCTTCCAAATCCTTCCAATTGTTTGATATTCATTGACGGAACTTACAAAGAAGAAAACAAGCAAGAGAGTTCATCATCTGGGAGCCCTGCCATGAGGTCTTTTGTGGAGTACCAGAAGTCAATCTTCTTGATTATTAATGATTACAGAGTAGGAGTTCCAGG...

Protein

Download Protein FASTA

525 aa · TkA07G097870|TK1151|PROTEIN

MDSIFNLEETERSSRLRQLMDSFDFTYVCLWSHLPNPSNCLIFIDGTYKEENKQESSSSGSPAMRSFVEYQKSIFLIINDYRVGVPGFAFKHNLPYMERKGVELLRLASNPAQLQFYEEARIKTAMFMGCKNGEIELGMSNVSSQINFEMVLKKMFPGDFPQDLMVPQQARASSSSSSRRSLSMENSAEYSPFLFNMLQTTSHMPEIYPLDQNPYLDPSSSTMRSEDSTLQQALNQIRPGHLIPYREHEESLMTKAIIQA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G097870
TK1151 IDTkA07G097870
OH-1004 IDLXL04_027860
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G097870
LocationChr07:25541202-25543617 (-)
DescriptionSimilar to BHLH41: Putative transcription factor bHLH041
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g56960 Putative transcription factor bHLH041. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027860 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009733 response to auxin Biological Process
GO:0009813 flavonoid biosynthetic process Biological Process
GO:0010090 trichome morphogenesis Biological Process
GO:0010629 negative regulation of gene expression Biological Process
GO:0031542 positive regulation of anthocyanin biosynthetic process Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0080090 regulation of primary metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
KEGG gene cross-reference
ath:AT1G01260
ath:AT5G56960
sly:101261048
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.946
Rank 1 · TkA07G097870 · TK1151
Cytoplasm0.122
Rank 2 · TkA07G097870 · TK1151
Cell membrane0.033
Rank 3 · TkA07G097870 · TK1151
Endoplasmic reticulum0.023
Rank 4 · TkA07G097870 · TK1151
Plastid0.013
Rank 5 · TkA07G097870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23133DUF70501-162 aa
PF14215bHLH-MYC_N14-62 aa
PF14215bHLH-MYC_N117-145 aa
PF23133DUF7050171-230 aa
PF18282RAP80_UIM247-270 aa
PF23177bHLH_IRO3300-320 aa
PF03004Transposase_24315-404 aa
PF00010HLH336-383 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G097870PF23133DUF705011623.6e-57193.1
TkA07G097870PF14215bHLH-MYC_N14620.0005720.9
TkA07G097870PF14215bHLH-MYC_N1171450.0005720.9
TkA07G097870PF23133DUF70501712303.6e-57193.1
TkA07G097870PF18282RAP80_UIM2472700.06113.8
TkA07G097870PF23177bHLH_IRO33003203.8e-0627.9
TkA07G097870PF03004Transposase_243154040.7410.7
TkA07G097870PF00010HLH3363831.1e-1248.3
TkA07G097870PF23177bHLH_IRO33413983.8e-0627.9
TkA07G097870PF23173bHLH_SAC513423850.0004420.8
TkA07G097870PF07716bZIP_23443502.49.0
TkA07G097870PF14215bHLH-MYC_N3653650.0005720.9
TkA07G097870PF07716bZIP_23744022.49.0
TkA07G097870PF23132DUF70494174936e-1865.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LTS4Arabidopsis thalianasp|Q9LTS4|BH041_ARATH Putative transcription factor bHLH04136.100%Swiss-ProtMedium

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