Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1578 bp · LXL04_027860|LXL04_027860|OH1004|cDNA
ATGGACTCCATTTTCAATCTTGAAGAAACTGAAAGATCCAGTAGACTTCGACAACTCATGGACTCGTTTGATTTCACTTATGTCTGCCTCTGGTCTCACCTTCCAAATCCTTCCAATTGTTTGATATTCATTGACGGAACTTACAAAGAAGAAAACAAGCAAGAGAGTTCATCATCTGGGAGCCCTGCCATGAGGTCTTTTGTGGAGTATCAGAAGTCAATCTTCTTGATTATTAATGATTACAGAGTAGGAGTTCCAGG...
1578 bp · LXL04_027860|LXL04_027860|OH1004|CDS
ATGGACTCCATTTTCAATCTTGAAGAAACTGAAAGATCCAGTAGACTTCGACAACTCATGGACTCGTTTGATTTCACTTATGTCTGCCTCTGGTCTCACCTTCCAAATCCTTCCAATTGTTTGATATTCATTGACGGAACTTACAAAGAAGAAAACAAGCAAGAGAGTTCATCATCTGGGAGCCCTGCCATGAGGTCTTTTGTGGAGTATCAGAAGTCAATCTTCTTGATTATTAATGATTACAGAGTAGGAGTTCCAGG...
Protein
Download Protein FASTA525 aa · LXL04_027860|LXL04_027860|OH1004|PROTEIN
MDSIFNLEETERSSRLRQLMDSFDFTYVCLWSHLPNPSNCLIFIDGTYKEENKQESSSSGSPAMRSFVEYQKSIFLIINDYRVGVPGFAFKHNLPYMERKGVELLRLASNPAQLQFYEEARIKTAMFMGCKNGEIELGMSNVSSQINFEMVLKKMFPGDFPQDLMVPQQARASSSSSSRRSLSMENSAEYSPFLFNMLQTTSHMPEIYPLDQNPYLDPSSSTMRSEDSTLQQALNQIRPGHLIPYREHEESLMTKAIIQA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_027860 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_027860 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:24916947-24919369 (-) | |||||||||
| Description | Similar to BHLH41: Putative transcription factor bHLH041 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0009733 response to auxin Biological Process GO:0009813 flavonoid biosynthetic process Biological Process GO:0010090 trichome morphogenesis Biological Process GO:0010629 negative regulation of gene expression Biological Process GO:0031542 positive regulation of anthocyanin biosynthetic process Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0080090 regulation of primary metabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0000976 transcription cis-regulatory region binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G01260 ath:AT5G56960 sly:101261048 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF23133.2DUF70501-162 aaPF00010.32HLH336-383 aaPF23177.2bHLH_IRO3341-398 aaPF23132.3DUF7049417-493 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_027860 | PF23133.2 | DUF7050 | 1 | 162 | 3.6e-57 | 193.1 |
| LXL04_027860 | PF00010.32 | HLH | 336 | 383 | 1.1e-12 | 48.3 |
| LXL04_027860 | PF23177.2 | bHLH_IRO3 | 341 | 398 | 3.8e-06 | 27.9 |
| LXL04_027860 | PF23132.3 | DUF7049 | 417 | 493 | 7.2e-18 | 65.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.