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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G084110
Reference: TK1151 Chr: Chr07 Coordinates: 21996253-21998373 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2121 bp · TkA07G084110|TK1151|cDNA

ATGGCTTCCACTTTCTTCACTGCGAATTCATTAGACCTAAAACATCATCACAACCAAATCCCCTTCACCTTCACCTTCAGTTCTCCAAAAAGAACAAAGAAATCGCCGTTTTTCTACTGCAATTCCTCCAAATCATCACCGAAACCACCAATTCCAGACCTATCGGAAGACCCCAAGAAACAGAACCCTTCTTTAGCTGATCAACTCAAAACCTTATCCACAACAACCCTCTCAGATTCTCCACAAAAAACCGCTCAATT...

CDS

Download CDS FASTA

2121 bp · TkA07G084110|TK1151|CDS

ATGGCTTCCACTTTCTTCACTGCGAATTCATTAGACCTAAAACATCATCACAACCAAATCCCCTTCACCTTCACCTTCAGTTCTCCAAAAAGAACAAAGAAATCGCCGTTTTTCTACTGCAATTCCTCCAAATCATCACCGAAACCACCAATTCCAGACCTATCGGAAGACCCCAAGAAACAGAACCCTTCTTTAGCTGATCAACTCAAAACCTTATCCACAACAACCCTCTCAGATTCTCCACAAAAAACCGCTCAATT...

Protein

Download Protein FASTA

706 aa · TkA07G084110|TK1151|PROTEIN

MASTFFTANSLDLKHHHNQIPFTFTFSSPKRTKKSPFFYCNSSKSSPKPPIPDLSEDPKKQNPSLADQLKTLSTTTLSDSPQKTAQLLTKPKSIWVNPTKPRPSVLNLQRQKRTSYSYNPQIRDLKLFSKKLNDCENNEDAFLKVLEEIPHPPTRENALLVLNSLKPWEKAMFFFNWLKTQDSFPMETIFYNVTMKSLRFGRQFQLIEDLANEMISNGVQLDNITYSTIITCAKRSNLFDKAVEWFERMYKTGLMPDEVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G084110
TK1151 IDTkA07G084110
OH-1004 IDLXL04_009969
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)47.600
Protein coverage (%)TK1151 86.827 / OH-1004 73.697
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G084110
LocationChr07:21996253-21998373 (+)
DescriptionSimilar to P67: Pentatricopeptide repeat-containing protein At4g16390, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g46580 Pentatricopeptide repeat-containing protein At5g46580, chloroplastic. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0215900 Involved in translation and accumulation of chloroplast ATP synthase subunits. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009969 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0010019 chloroplast-nucleus signaling pathway Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0031930 mitochondria-nucleus signaling pathway Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0045727 positive regulation of translation Biological Process
GO:1901259 chloroplast rRNA processing Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0000166 nucleotide binding Molecular Function
GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G31400
ath:AT4G16390
ath:AT5G46580
dosa:Os03g0215900
osa:4332063
zma:100191483
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.522
Rank 1 · TkA07G084110 · TK1151
Mitochondrion0.397
Rank 2 · TkA07G084110 · TK1151
Nucleus0.058
Rank 3 · TkA07G084110 · TK1151
Cytoplasm0.032
Rank 4 · TkA07G084110 · TK1151
Cell membrane0.011
Rank 5 · TkA07G084110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N108-142 aa
PF13041PPR_2168-179 aa
PF13041PPR_2188-232 aa
PF01535PPR191-219 aa
PF17177PPR_long201-285 aa
PF19189Mtf2202-227 aa
PF29070MSC6_N203-246 aa
PF28753RMD9_N205-249 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G084110PF29070MSC6_N1081422e-1867.4
TkA07G084110PF13041PPR_21681792.5e-52175.5
TkA07G084110PF13041PPR_21882322.5e-52175.5
TkA07G084110PF01535PPR1912191.6e-44147.7
TkA07G084110PF17177PPR_long2012851.9e-2383.7
TkA07G084110PF19189Mtf22022272.1e-0628.3
TkA07G084110PF29070MSC6_N2032462e-1867.4
TkA07G084110PF28753RMD9_N2052492.8e-0524.8
TkA07G084110PF13812PPR_32112691.8e-36124.7
TkA07G084110PF23276TPR_242142823.5e-1350.3
TkA07G084110PF12854PPR_12172499.1e-35118.8
TkA07G084110PF00637Clathrin2232800.0215.4
TkA07G084110PF01535PPR2242511.6e-44147.7
TkA07G084110PF13041PPR_22282702.5e-52175.5
TkA07G084110PF13428TPR_142352522.2e-0628.5
TkA07G084110PF13176TPR_72352490.1612.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LS25Arabidopsis thalianasp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580, chloroplastic67.100%Swiss-ProtHigh
Q10PZ4Oryza sativa subsp. japonicasp|Q10PZ4|ATP4_ORYSJ Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic34.800%Swiss-ProtLow

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