TkA07G078490 | RubberDandelionOmics

Gene overview

TkA07G078490

Reference: TK1151 Chr: Chr07 Coordinates: 20440093-20443932 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1874 bp · TkA07G078490|TK1151|cDNA

GGAGTGGGGTCCAAGTGTAGTTTTTGGCATTCCATTCAACAATAGTAGACTTCTTCAACGTTGCAAAGAGAGAAGAATCAAAGCGCCGACCAAAGATTTAAGAAAAGAAAAACCCTTTTTGTCTGTCATGGATCTCATCTAAATTTCAACGTCGAATGTCTGTGTTCATTTGCCAATAGGCATCTCGAGATTCAAAATCCCAGAAGAACCTTCTTCAAGATTTTGCTGCTATTGTGCTATTCCATTACTTTCCATTTGTG...

CDS

Download CDS FASTA

1083 bp · TkA07G078490|TK1151|CDS

ATGGCAAGAAAAAATCTGGGCTGTTCATCATCACTATTTCTTGTTCTTCTAGCAGTTGGTTCATTCTTTGCTACTTATAATCTAATCACATTGGTGGTTCACAATAAAGCAGCAAATCATGGACAATATACTTATGATCCACTTGTTGTGATGCCTGATAATATGAAGAGAACCGGGGGTAAAAAGGTCTTATTCCATGTTGCACTCACAGCTACAGATGCTCCTTACAGCAAATGGCAATGCAGGATTATGTATTATTG...

Protein

Download Protein FASTA

360 aa · TkA07G078490|TK1151|PROTEIN

MARKNLGCSSSLFLVLLAVGSFFATYNLITLVVHNKAANHGQYTYDPLVVMPDNMKRTGGKKVLFHVALTATDAPYSKWQCRIMYYWYKKTKDMEGSEMGKFTRILHSGQPDNLMDEIPTFVVDPLPSGLDRGYIVLNRPWAFVQWLEKATIEEDYILMAEPDHIFVNPLPNLARGGHPAAFPFFYIEPEKNEKVIRKYYPVENGPVNNVDPIGNSPVIIRKDLLEKIAPTWMNVSLRMKDDPETDKTFGWVLEMYAYAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G078490`
TK1151 ID	TkA07G078490
OH-1004 ID	LXL04_027612
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G078490

Location Chr07:20440093-20443932 (+)

Description Similar to HPAT3: Hydroxyproline O-arabinosyltransferase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13500`	Glycosyltransferase involved in the O-arabinosylation of several proteins including extensins and small signaling peptides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027612 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:1990585 hydroxyproline O-arabinosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT5G13500

mtr:11432343

mtr:11443987

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.788

Rank 1 · TkA07G078490 · TK1151

Endoplasmic reticulum0.158

Rank 2 · TkA07G078490 · TK1151

Cytoplasm0.072

Rank 3 · TkA07G078490 · TK1151

Cell membrane0.049

Rank 4 · TkA07G078490 · TK1151

Extracellular0.043

Rank 5 · TkA07G078490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23452HPAT65-270 aa

PF17297PEPCK_N65-109 aa

PF28609HPAT_C289-358 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G078490	`PF23452`	HPAT	65	270	8.3e-91	304.4
TkA07G078490	`PF17297`	PEPCK_N	65	109	0.096	13.0
TkA07G078490	`PF28609`	HPAT_C	289	358	4e-30	104.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FY51`	Arabidopsis thaliana	sp\|Q9FY51\|HPAT3_ARATH Hydroxyproline O-arabinosyltransferase 3	76.500%	Swiss-Prot	High

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