TkA07G074270 | RubberDandelionOmics

Gene overview

TkA07G074270

Reference: TK1151 Chr: Chr07 Coordinates: 19453905-19454312 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

408 bp · TkA07G074270|TK1151|cDNA

CTTGTGAACAGCTCAAGGAAACTTAATAGTCTCTGCCTTACCAAATGCCACGGTATCACGAGGGAAGGGCTGCGTCGGGCACTCAAAACGGTTCCAAAATTGGAGAAACTTCACATTTCTTTCATGTATTTGGGTAAAGAGTTCATCAAAGTTATTGCACCGAATTACCCTCAGCTCAAGTCCTTCAAGTTGGACAGACTGTGCTTACATTTAGGCTTAACTTATGACTGCGATGGCTTTACCATTGCAAACAACATGCG...

CDS

Download CDS FASTA

408 bp · TkA07G074270|TK1151|CDS

CTTGTGAACAGCTCAAGGAAACTTAATAGTCTCTGCCTTACCAAATGCCACGGTATCACGAGGGAAGGGCTGCGTCGGGCACTCAAAACGGTTCCAAAATTGGAGAAACTTCACATTTCTTTCATGTATTTGGGTAAAGAGTTCATCAAAGTTATTGCACCGAATTACCCTCAGCTCAAGTCCTTCAAGTTGGACAGACTGTGCTTACATTTAGGCTTAACTTATGACTGCGATGGCTTTACCATTGCAAACAACATGCG...

Protein

Download Protein FASTA

135 aa · TkA07G074270|TK1151|PROTEIN

LVNSSRKLNSLCLTKCHGITREGLRRALKTVPKLEKLHISFMYLGKEFIKVIAPNYPQLKSFKLDRLCLHLGLTYDCDGFTIANNMRELRHLHVFGYKMTHFGLQAVLDGCPHVESLHIRTCFNFEFDENEVVEN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G074270`
TK1151 ID	TkA07G074270
OH-1004 ID	LXL04_027565
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	72.000
Protein coverage (%)	TK1151 97.778 / OH-1004 30.879 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G074270

Location Chr07:19453905-19454312 (-)

Description Similar to FBL23: Putative F-box/LRR-repeat protein 23

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g05500`	Putative F-box/LRR-repeat protein 23.	No verified direct reference in this release
`At4g05490`	Putative F-box/LRR-repeat protein 22.	No verified direct reference in this release
`At4g05475`	Putative F-box protein At4g05475.	No verified direct reference in this release
`At4g05470`	Putative F-box/LRR-repeat protein 21.	No verified direct reference in this release
`At4g05497`	Putative F-box/LRR-repeat protein 9.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027565 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:1905761 SCF ubiquitin ligase complex binding Molecular Function

KEGG gene cross-reference

ath:AT4G05460

ath:AT4G05490

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.586

Rank 1 · TkA07G074270 · TK1151

Nucleus0.494

Rank 2 · TkA07G074270 · TK1151

Endoplasmic reticulum0.056

Rank 3 · TkA07G074270 · TK1151

Cell membrane0.047

Rank 4 · TkA07G074270 · TK1151

Mitochondrion0.025

Rank 5 · TkA07G074270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23622LRR_At1g61320_AtMIF12-65 aa

PF29594LRR_SKP25-57 aa

PF25019LRR_R13L1-DRL215-42 aa

PF25372LRR_FBXL155-59 aa

PF24758LRR_At5g563707-65 aa

PF20183DUF654626-64 aa

PF05152DUF70544-119 aa

PF24758LRR_At5g5637064-122 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G074270	`PF23622`	LRR_At1g61320_AtMIF1	2	65	0.034	14.3
TkA07G074270	`PF29594`	LRR_SKP2	5	57	7.8e-06	26.0
TkA07G074270	`PF25019`	LRR_R13L1-DRL21	5	42	0.024	15.3
TkA07G074270	`PF25372`	LRR_FBXL15	5	59	0.077	12.1
TkA07G074270	`PF24758`	LRR_At5g56370	7	65	1.4e-05	25.6
TkA07G074270	`PF20183`	DUF6546	26	64	0.3	11.2
TkA07G074270	`PF05152`	DUF705	44	119	0.079	13.2
TkA07G074270	`PF24758`	LRR_At5g56370	64	122	1.4e-05	25.6
TkA07G074270	`PF25372`	LRR_FBXL15	84	122	0.077	12.1
TkA07G074270	`PF23622`	LRR_At1g61320_AtMIF1	85	123	0.034	14.3
TkA07G074270	`PF29594`	LRR_SKP2	87	119	7.8e-06	26.0
TkA07G074270	`PF25019`	LRR_R13L1-DRL21	87	125	0.024	15.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S9V9`	Arabidopsis thaliana	sp\|Q9S9V9\|FBL23_ARATH Putative F-box/LRR-repeat protein 23	40.500%	Swiss-Prot	Medium
`Q9M0U6`	Arabidopsis thaliana	sp\|Q9M0U6\|FBL22_ARATH Putative F-box/LRR-repeat protein 22	39.600%	Swiss-Prot	Medium
`Q9M0U7`	Arabidopsis thaliana	sp\|Q9M0U7\|FB221_ARATH Putative F-box protein At4g05475	37.500%	Swiss-Prot	Medium
`Q9M0U8`	Arabidopsis thaliana	sp\|Q9M0U8\|FBL21_ARATH Putative F-box/LRR-repeat protein 21	34.600%	Swiss-Prot	Medium
`Q9S9V8`	Arabidopsis thaliana	sp\|Q9S9V8\|FBL9_ARATH Putative F-box/LRR-repeat protein 9	31.500%	Swiss-Prot	Medium

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