LXL04_027565 | RubberDandelionOmics

Gene overview

LXL04_027565

Reference: OH-1004 Chr: Chr06 Coordinates: 19074608-19076585 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1266 bp · LXL04_027565|LXL04_027565|OH1004|cDNA

ATGGCAGGAAACGCAGGTCCATCAACGGTTTGTGAGCAAGGTAATATCACACTCCAATGTCCTAAATTGACCGAAACCAACTATCCTTCATGGTCAATCTTGGTTGAAACGGTATTGAGAGCACATGGCCTTTGGAAGACGGTAACCGGAGAAGATGAGGACGAGAAAAGAAACTATACCACAAAAGCAGTAATTTATCCAACCCTCCCCGAAGATGTTCTTTTGCAAATGGCTAAATACAAGAATGCGGAAGAAGTTTG...

CDS

Download CDS FASTA

1266 bp · LXL04_027565|LXL04_027565|OH1004|CDS

ATGGCAGGAAACGCAGGTCCATCAACGGTTTGTGAGCAAGGTAATATCACACTCCAATGTCCTAAATTGACCGAAACCAACTATCCTTCATGGTCAATCTTGGTTGAAACGGTATTGAGAGCACATGGCCTTTGGAAGACGGTAACCGGAGAAGATGAGGACGAGAAAAGAAACTATACCACAAAAGCAGTAATTTATCCAACCCTCCCCGAAGATGTTCTTTTGCAAATGGCTAAATACAAGAATGCGGAAGAAGTTTG...

Protein

Download Protein FASTA

421 aa · LXL04_027565|LXL04_027565|OH1004|PROTEIN

MAGNAGPSTVCEQGNITLQCPKLTETNYPSWSILVETVLRAHGLWKTVTGEDEDEKRNYTTKAVIYPTLPEDVLLQMAKYKNAEEVWESIRIRYLGTDRVQKARLQTLSGDLERLKMKDNETIDDFSGKLGAIVEKFKSLGSCLDEEMAVRKFLNSVPHKYLPFVASIEQYSDLETMSLEEAVGRLKAYEDRLKIHDESNEERGQHGQLLLSNGEHDDRQYGRGRGRGFGRGERGRGRGSGRADNLTNSSKLKSLCLTNC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_027565`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_027565

Location Chr06:19074608-19076585 (-)

Description Similar to FBL23: Putative F-box/LRR-repeat protein 23

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g05500`	Putative F-box/LRR-repeat protein 23.	No verified direct reference in this release
`At4g05460`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At4g05490`	Putative F-box/LRR-repeat protein 22.	No verified direct reference in this release
`At4g05470`	Putative F-box/LRR-repeat protein 21.	No verified direct reference in this release
`At4g05475`	Putative F-box protein At4g05475.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027565 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:1905761 SCF ubiquitin ligase complex binding Molecular Function

KEGG gene cross-reference

ath:AT4G05460

ath:AT4G05490

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.554

Rank 1 · LXL04_027565 · OH-1004

Nucleus0.446

Rank 2 · LXL04_027565 · OH-1004

Endoplasmic reticulum0.064

Rank 3 · LXL04_027565 · OH-1004

Cell membrane0.056

Rank 4 · LXL04_027565 · OH-1004

Mitochondrion0.045

Rank 5 · LXL04_027565 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13961.13DUF421923-48 aa

PF14223.15Retrotran_gag_235-194 aa

PF24758.2LRR_At5g56370245-312 aa

PF24758.2LRR_At5g56370322-368 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_027565	`PF13961.13`	DUF4219	23	48	5.9e-07	29.8
LXL04_027565	`PF14223.15`	Retrotran_gag_2	35	194	3.2e-23	83.0
LXL04_027565	`PF24758.2`	LRR_At5g56370	245	312	6.3e-13	49.6
LXL04_027565	`PF24758.2`	LRR_At5g56370	322	368	6.3e-13	49.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S9V9`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein 23	46.099%	Swiss-Prot	weak database homology
`Q9M0U9`	Arabidopsis thaliana	F-box protein SKIP19	34.637%	Swiss-Prot	weak database homology
`Q9M0U6`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein 22	37.288%	Swiss-Prot	weak database homology
`Q9M0U8`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein 21	35.256%	Swiss-Prot	weak database homology
`Q9M0U7`	Arabidopsis thaliana	Putative F-box protein At4g05475	38.686%	Swiss-Prot	weak database homology

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