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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G073090
Reference: TK1151 Chr: Chr07 Coordinates: 19160066-19162716 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1020 bp · TkA07G073090|TK1151|cDNA

ATGAGTTCGTATCGATTGATATCAGAGTCATCTCCATCTTGCAAGGTTCCAACATCCGGAGTGGTACCCTATGGAGTGGTGACTTTGACCCCAAAAAAGGGTGTTAACCGTGACCAATGTAGCCGTGACGAACGAGCATTGGAAGTGGTGATTTTATGGAGTGGTGGTTTGGGCCCGAGAAGAGGGGTGGCATTGACGAACATAGTCGTGACCCACGAGGACGTTGTTTTACCTAACTTTTTCGATGATCTTGCTAAAAG...

CDS

Download CDS FASTA

1020 bp · TkA07G073090|TK1151|CDS

ATGAGTTCGTATCGATTGATATCAGAGTCATCTCCATCTTGCAAGGTTCCAACATCCGGAGTGGTACCCTATGGAGTGGTGACTTTGACCCCAAAAAAGGGTGTTAACCGTGACCAATGTAGCCGTGACGAACGAGCATTGGAAGTGGTGATTTTATGGAGTGGTGGTTTGGGCCCGAGAAGAGGGGTGGCATTGACGAACATAGTCGTGACCCACGAGGACGTTGTTTTACCTAACTTTTTCGATGATCTTGCTAAAAG...

Protein

Download Protein FASTA

339 aa · TkA07G073090|TK1151|PROTEIN

MSSYRLISESSPSCKVPTSGVVPYGVVTLTPKKGVNRDQCSRDERALEVVILWSGGLGPRRGVALTNIVVTHEDVVLPNFFDDLAKRIQVCFFKGGARLFEMAPTSKRSSAMKESPNWLEMPDELMYPAMWKVINMIKHPDDGWDWNWDRSLEALTKEAVDLSCGELIDITIEGFCTDELLNHIVLHSNKLKRLCLWRCFDITDSVLGMAVKKVPQLEELHLACTIINAKDLEVIGRNCPQLKSFKMTHVCTGAFKDHAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G073090
TK1151 IDTkA07G073090
OH-1004 IDLXL04_027560
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)64.000
Protein coverage (%)TK1151 69.027 / OH-1004 92.908
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G073090
LocationChr07:19160066-19162716 (+)
DescriptionSimilar to FBL23: Putative F-box/LRR-repeat protein 23
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g05500 Putative F-box/LRR-repeat protein 23. No verified direct reference in this release
At4g05475 Putative F-box protein At4g05475. No verified direct reference in this release
At4g05490 Putative F-box/LRR-repeat protein 22. No verified direct reference in this release
At4g05470 Putative F-box/LRR-repeat protein 21. No verified direct reference in this release
At4g05497 Putative F-box/LRR-repeat protein 9. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027560 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:1905761 SCF ubiquitin ligase complex binding Molecular Function
KEGG gene cross-reference
ath:AT4G05460
ath:AT4G05475
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.493
Rank 1 · TkA07G073090 · TK1151
Cytoplasm0.399
Rank 2 · TkA07G073090 · TK1151
Cell membrane0.106
Rank 3 · TkA07G073090 · TK1151
Endoplasmic reticulum0.082
Rank 4 · TkA07G073090 · TK1151
Plastid0.065
Rank 5 · TkA07G073090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855LRR_8160-194 aa
PF29594LRR_SKP2164-302 aa
PF23598LRR_14176-275 aa
PF23622LRR_At1g61320_AtMIF1177-249 aa
PF25372LRR_FBXL15178-247 aa
PF24758LRR_At5g56370181-251 aa
PF12799LRR_4190-230 aa
PF19729LRR_FBXL18203-300 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G073090PF13855LRR_81601949.9e-0625.9
TkA07G073090PF29594LRR_SKP21643025.3e-0729.9
TkA07G073090PF23598LRR_141762750.001518.1
TkA07G073090PF23622LRR_At1g61320_AtMIF11772491.7e-0525.1
TkA07G073090PF25372LRR_FBXL151782473.3e-0833.1
TkA07G073090PF24758LRR_At5g563701812514.7e-1453.3
TkA07G073090PF12799LRR_41902307e-0833.2
TkA07G073090PF19729LRR_FBXL182033000.06912.3
TkA07G073090PF24048LRR_NXF1-52072470.1312.6
TkA07G073090PF12799LRR_42152477e-0833.2
TkA07G073090PF13855LRR_82152789.9e-0625.9
TkA07G073090PF13516LRR_62172342.6e-0627.8
TkA07G073090PF24048LRR_NXF1-52312800.1312.6
TkA07G073090PF23598LRR_142413000.001518.1
TkA07G073090PF24758LRR_At5g563702543034.7e-1453.3
TkA07G073090PF25372LRR_FBXL152563093.3e-0833.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9S9V9Arabidopsis thalianasp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 2344.800%Swiss-ProtMedium
Q9M0U7Arabidopsis thalianasp|Q9M0U7|FB221_ARATH Putative F-box protein At4g0547539.300%Swiss-ProtMedium
Q9M0U6Arabidopsis thalianasp|Q9M0U6|FBL22_ARATH Putative F-box/LRR-repeat protein 2235.900%Swiss-ProtMedium
Q9M0U8Arabidopsis thalianasp|Q9M0U8|FBL21_ARATH Putative F-box/LRR-repeat protein 2134.600%Swiss-ProtMedium
Q9S9V8Arabidopsis thalianasp|Q9S9V8|FBL9_ARATH Putative F-box/LRR-repeat protein 935.800%Swiss-ProtMedium

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