TkA07G072870 | RubberDandelionOmics

Gene overview

TkA07G072870

Reference: TK1151 Chr: Chr07 Coordinates: 19093447-19098607 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2670 bp · TkA07G072870|TK1151|cDNA

ATATTTTTCATTTAGGTAGACATGGTTTCTTCACCTGACCTTTAAAACATGATCATGTGATGTCTACTCGGTACATCAATCCACACCTTTTGTCACGTTTACTCCCATTTTAGGTCTTAAAAATATTTTTCGATCCCTCTCAAAATTTCCATTTCGGCAAATTACCGTTGATTTCCTCTGGTTCGTGGCATTCGATTGCAGGTGAATCGATTCAAACTGCATCTTCGGCGAATTAGGGTACGCTGGAATCTGTTTCTCTT...

CDS

Download CDS FASTA

2082 bp · TkA07G072870|TK1151|CDS

ATGAAAATGAAGAGGTCAAGGAGTGAAGTTTTTGGTTTGAGGAGGGTAAGACTGCCACACATTTTGTTTGTTGTTGCTGCATTGTATCTGATCGTTGTTTGCTTCAAGTTCTCTGCCTATTTTGAGACGTCGACCAATACTGAGAATGAAGCAGTAAGGAAATATCAGTTAGAAGTGAGTAAGCCATCGTTAGGATCTGCATCTGAGGATGGAAACAGCGAGGCATCACAAAACGACAACAGATTTGAAAAAGTGAAACA...

Protein

Download Protein FASTA

693 aa · TkA07G072870|TK1151|PROTEIN

MKMKRSRSEVFGLRRVRLPHILFVVAALYLIVVCFKFSAYFETSTNTENEAVRKYQLEVSKPSLGSASEDGNSEASQNDNRFEKVKQEKKLEDEPDANIQKRLENESKIETASQKENNEDSFPPIDLRYGRLTGDVLRRRHRTRDMTGLEKMADEAWSLGLKAWEEVHKHNEKDTKLASILEGKQEQCPPWVSMSGEELTKGDRMMFLPCGLAAGSSITVVGTPQHAHNEYVPQLAKTKPGEPLVLVSQFKVELQGLKSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G072870`
TK1151 ID	TkA07G072870
OH-1004 ID	LXL04_027551
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G072870

Location Chr07:19093447-19098607 (+)

Description Similar to GALT2: Hydroxyproline O-galactosyltransferase GALT2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g21060`	Possesses hydroxyproline O-galactosyltransferase activity.	Functional identification of a hydroxyproline-o-galactosyltransferase specific for arabinogalactan protein biosynthesis in Arabidopsis.2013 · DOI: 10.1074/jbc.m112.432609 Two Hydroxyproline Galactosyltransferases, GALT5 and GALT2, Function in Arabinogalactan-Protein Glycosylation, Growth and Development in Arabidopsis.2015 · DOI: 10.1371/journal.pone.0125624 A small multigene hydroxyproline-O-galactosyltransferase family functions in arabinogalactan-protein glycosylation, growth and development in Arabidopsis.2015 · DOI: 10.1186/s12870-015-0670-7
`At5g62620`	Possesses hydroxyproline O-galactosyltransferase activity.	A small multigene hydroxyproline-O-galactosyltransferase family functions in arabinogalactan-protein glycosylation, growth and development in Arabidopsis.2015 · DOI: 10.1186/s12870-015-0670-7
`At1g74800`	Possesses hydroxyproline O-galactosyltransferase activity.	Two Hydroxyproline Galactosyltransferases, GALT5 and GALT2, Function in Arabinogalactan-Protein Glycosylation, Growth and Development in Arabidopsis.2015 · DOI: 10.1371/journal.pone.0125624 A small multigene hydroxyproline-O-galactosyltransferase family functions in arabinogalactan-protein glycosylation, growth and development in Arabidopsis.2015 · DOI: 10.1186/s12870-015-0670-7
`At1g27120`	Possesses hydroxyproline O-galactosyltransferase activity.	A small multigene hydroxyproline-O-galactosyltransferase family functions in arabinogalactan-protein glycosylation, growth and development in Arabidopsis.2015 · DOI: 10.1186/s12870-015-0670-7
`At1g26810`	Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal beta-N-acetylglucosamine (beta-GlcNAc) residue.	A unique beta1,3-galactosyltransferase is indispensable for the biosynthesis of N-glycans containing Lewis a structures in Arabidopsis thaliana.2007 · DOI: 10.1105/tpc.107.052985

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027551 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006493 protein O-linked glycosylation Biological Process

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0010208 pollen wall assembly Biological Process

GO:0010405 arabinogalactan protein metabolic process Biological Process

GO:0010493 Lewis a epitope biosynthetic process Biological Process

GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process

GO:0080147 root hair cell development Biological Process

GO:0180062 protein O-linked glycosylation via galactose Biological Process

GO:1900056 negative regulation of leaf senescence Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT1G26810

ath:AT1G27120

ath:AT1G74800

ath:AT4G21060

ath:AT5G62620

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.824

Rank 1 · TkA07G072870 · TK1151

Endoplasmic reticulum0.076

Rank 2 · TkA07G072870 · TK1151

Cell membrane0.064

Rank 3 · TkA07G072870 · TK1151

Cytoplasm0.061

Rank 4 · TkA07G072870 · TK1151

Extracellular0.059

Rank 5 · TkA07G072870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22251PFF1_TM23-121 aa

PF00337Gal-bind_lectin207-412 aa

PF01762Galactosyl_T356-369 aa

PF02434Fringe448-473 aa

PF01762Galactosyl_T461-642 aa

PF02434Fringe532-644 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G072870	`PF22251`	PFF1_TM	23	121	0.11	12.8
TkA07G072870	`PF00337`	Gal-bind_lectin	207	412	1.1e-29	103.3
TkA07G072870	`PF01762`	Galactosyl_T	356	369	6.3e-35	121.4
TkA07G072870	`PF02434`	Fringe	448	473	0.00015	21.8
TkA07G072870	`PF01762`	Galactosyl_T	461	642	6.3e-35	121.4
TkA07G072870	`PF02434`	Fringe	532	644	0.00015	21.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A7XDQ9`	Arabidopsis thaliana	sp\|A7XDQ9\|B3GTK_ARATH Hydroxyproline O-galactosyltransferase GALT2	63.100%	Swiss-Prot	High
`Q9LV16`	Arabidopsis thaliana	sp\|Q9LV16\|B3GTJ_ARATH Hydroxyproline O-galactosyltransferase GALT6	59.000%	Swiss-Prot	High
`Q8RX55`	Arabidopsis thaliana	sp\|Q8RX55\|B3GTI_ARATH Hydroxyproline O-galactosyltransferase GALT5	57.200%	Swiss-Prot	High
`Q8GXG6`	Arabidopsis thaliana	sp\|Q8GXG6\|B3GTH_ARATH Hydroxyproline O-galactosyltransferase GALT4	56.600%	Swiss-Prot	High
`Q8L7F9`	Arabidopsis thaliana	sp\|Q8L7F9\|B3GTF_ARATH Beta-1,3-galactosyltransferase GALT1	35.900%	Swiss-Prot	Medium

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