TkA07G057540 | RubberDandelionOmics

Gene overview

TkA07G057540

Reference: TK1151 Chr: Chr07 Coordinates: 15277800-15279833 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1668 bp · TkA07G057540|TK1151|cDNA

AGTCAATCAATTTTCCACAAAAAAATATTGATATAAATAATTTCATGTCATAAATATTACGAAAATAATACGTAAAGAAGAACAGCTCTTCAACCTGATTCTTGCGTTCCAGCATATCTTTGACTTCAATCGAAGAACCCAGGTCGAACGTTCCAGATTTTGGTGGTTTTTCTATTTCAGGAAGTACATCTGATTGACTCGATAAGGTGACGTTATCTTGGTGGGTTTTGCCTTTTTAGGGGAAACAAGGAGGTTTACCT...

CDS

Download CDS FASTA

1098 bp · TkA07G057540|TK1151|CDS

ATGAATGATGCTCAAAGTAGCGGCAGTAATACTCTGCCTCCGTTCATCGCCAAAACCTACGAAATGGTCGATGATCCGTTAACCGATACCATCGTATCATGGAGTCACAACGACCGGAGCTTCATTGTTTGGGACCCACCTGAGTTTTCCGGCGAATTGCTTCCGAGATATTTCAAGCACAATAATTTCTCGAGCTTTATCAGACAACTCAACACATATGGATTCCGGAAAATCGATCCAGAACAATGGGAATTTGCAAA...

Protein

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365 aa · TkA07G057540|TK1151|PROTEIN

MNDAQSSGSNTLPPFIAKTYEMVDDPLTDTIVSWSHNDRSFIVWDPPEFSGELLPRYFKHNNFSSFIRQLNTYGFRKIDPEQWEFANEDFIRGQPHLLKNIHRKKPVHSHSLQNLHINGASASSFASSLTESERIRYKDDIYKLHHDKQSLSFEFQTLQHEQDEIESAARGLTERLRAAGRNQKDLLCTLDQILQKPVNIFDFTPQIPDNNDRKRRLSAEPNNHQSCSCNNPISETLTTNTLLALDLDLVEQLESSLMFC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G057540`
TK1151 ID	TkA07G057540
OH-1004 ID	LXL04_027419
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G057540

Location Chr07:15277800-15279833 (-)

Description Similar to HSFA4A: Heat stress transcription factor A-4a

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g18880`	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).	No verified direct reference in this release
`At5g45710`	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0749300`	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).	No verified direct reference in this release
`Os05g0530400`	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).	No verified direct reference in this release
`Os10g0419300`	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE).	Isolation and characterization of a cDNA encoding two novel heat-shock factor OsHSF6 and OsHSF12 in Oryza sativa L.2005 · DOI: 10.5483/bmbrep.2005.38.5.602

Functional annotation source

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Functional annotation source: OH1004 · LXL04_027419 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009408 response to heat Biological Process

GO:0009733 response to auxin Biological Process

GO:0009958 positive gravitropism Biological Process

GO:0034605 cellular response to heat Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048364 root development Biological Process

GO:0048527 lateral root development Biological Process

GO:0048530 fruit morphogenesis Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT4G18880

ath:AT5G45710

dosa:Os01g0749300

dosa:Os10g0419300

sly:101263626

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.847

Rank 1 · TkA07G057540 · TK1151

Cytoplasm0.279

Rank 2 · TkA07G057540 · TK1151

Mitochondrion0.025

Rank 3 · TkA07G057540 · TK1151

Cell membrane0.019

Rank 4 · TkA07G057540 · TK1151

Lysosome / Vacuole0.013

Rank 5 · TkA07G057540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00447HSF_DNA-bind15-104 aa

PF28219Spindly109-197 aa

PF13747DUF4164133-187 aa

PF28219Spindly251-275 aa

PF13747DUF4164269-269 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G057540	`PF00447`	HSF_DNA-bind	15	104	4.2e-31	108.1
TkA07G057540	`PF28219`	Spindly	109	197	0.042	13.5
TkA07G057540	`PF13747`	DUF4164	133	187	0.1	13.8
TkA07G057540	`PF28219`	Spindly	251	275	0.042	13.5
TkA07G057540	`PF13747`	DUF4164	269	269	0.1	13.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O49403`	Arabidopsis thaliana	sp\|O49403\|HFA4A_ARATH Heat stress transcription factor A-4a	41.100%	Swiss-Prot	Medium
`Q9FK72`	Arabidopsis thaliana	sp\|Q9FK72\|HFA4C_ARATH Heat stress transcription factor A-4c	40.100%	Swiss-Prot	Medium
`Q94J16`	Oryza sativa subsp. japonica	sp\|Q94J16\|HFA4B_ORYSJ Heat stress transcription factor A-4b	33.000%	Swiss-Prot	Medium
`Q93VB5`	Oryza sativa subsp. japonica	sp\|Q93VB5\|HFA4D_ORYSJ Heat stress transcription factor A-4d	50.700%	Swiss-Prot	Medium
`Q338B0`	Oryza sativa subsp. japonica	sp\|Q338B0\|HFA2C_ORYSJ Heat stress transcription factor A-2c	34.400%	Swiss-Prot	Medium

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