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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G053490
Reference: TK1151 Chr: Chr07 Coordinates: 14276988-14285590 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1247 bp · TkA07G053490|TK1151|cDNA

ATATATATAACTGATATTTGATTATTATCTAACTTGTAGTTGCACCCATCAAGCATATCGAGAAGAAAAAGAAAGATTTCGAAGAAGCAAAAGAACTTTTGAAAGTGGTATGTGATGAAATAGACAAGTTGGAATTCCATGATGCTCACCCTCGCTATTACACTAGACCGGTTCTTGAGGCTGCACGCCAAAACGCTTATGAGGTGGTTGATGAGATTCTAATGAGATCCCCTGAAGCAATTCGGTACAAAGATAAAAGC...

CDS

Download CDS FASTA

2595 bp · TkA07G053490|TK1151|CDS

ATGGCAGACTCGTGCTCACCAAACCCTCATTCACATGATGCTTCAACACAAACACAACAACATTTGGAATACTTATATGCATCGAATGCAAATGTTTTTAACTTTGTTTCCGTGAAGCTTTCCGGAGAGCACAACTATCATCTTTGGAAAATGCAAATACTTTGCCTCATGGAGACTTACGATATGCAGGGCATTGTTGATGCAACATTTATCCGACCGAGGAAACAATATGACAGTCTTGTCAAGGGTTGGATATTTGG...

Protein

Download Protein FASTA

864 aa · TkA07G053490|TK1151|PROTEIN

MADSCSPNPHSHDASTQTQQHLEYLYASNANVFNFVSVKLSGEHNYHLWKMQILCLMETYDMQGIVDATFIRPRKQYDSLVKGWIFGSVSEEILATVVDLDSAKEVWDKLKSFYDPNMISPQQASKKVEVETETKDKAKDRVPQEIKTEDEDGALQETTGSRTKKLHPTSIEKTETKDHDTVSPETKTKHEDTFVRAKTFKKCENKIRQNKQLRQAIVEGQWAEVESTIREDKSVATQAINSDGNTVLHIAVGIGRNNLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G053490
TK1151 IDTkA07G053490
OH-1004 IDLXL04_028202
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)55.500
Protein coverage (%)TK1151 95.486 / OH-1004 95.956
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G053490
LocationChr07:14276988-14285590 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028202 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0006654 phosphatidic acid biosynthetic process Biological Process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway Biological Process
GO:0031571 mitotic G1 DNA damage checkpoint signaling Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0046339 diacylglycerol metabolic process Biological Process
GO:0046486 glycerolipid metabolic process Biological Process
GO:0046580 negative regulation of Ras protein signal transduction Biological Process
GO:0046834 lipid phosphorylation Biological Process
GO:0050860 negative regulation of T cell receptor signaling pathway Biological Process
GO:0070682 proteasome regulatory particle assembly Biological Process
GO:0099562 maintenance of postsynaptic density structure Biological Process
KEGG gene cross-reference
ath:AT5G02620
ddi:DDB_G0287345
rno:81821
spo:2542919
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.870
Rank 1 · TkA07G053490 · TK1151
Endoplasmic reticulum0.081
Rank 2 · TkA07G053490 · TK1151
Cytoplasm0.076
Rank 3 · TkA07G053490 · TK1151
Nucleus0.035
Rank 4 · TkA07G053490 · TK1151
Lysosome / Vacuole0.027
Rank 5 · TkA07G053490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17241Retrotran_gag_430-95 aa
PF14223Retrotran_gag_272-115 aa
PF18689PriX159-180 aa
PF18689PriX188-217 aa
PF13857Ank_5232-258 aa
PF13637Ank_4238-256 aa
PF12796Ank_2240-263 aa
PF00023Ank243-264 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G053490PF17241Retrotran_gag_430950.001718.8
TkA07G053490PF14223Retrotran_gag_2721155.5e-0627.0
TkA07G053490PF18689PriX1591801.210.3
TkA07G053490PF18689PriX1882171.210.3
TkA07G053490PF13857Ank_52322582.8e-0834.7
TkA07G053490PF13637Ank_42382569.9e-0832.8
TkA07G053490PF12796Ank_22402638.1e-1659.1
TkA07G053490PF00023Ank2432649.5e-1245.2
TkA07G053490PF13606Ank_32432662.3e-0937.3
TkA07G053490PF12796Ank_22483368.1e-1659.1
TkA07G053490PF13857Ank_52763202.8e-0834.7
TkA07G053490PF13637Ank_42762999.9e-0832.8
TkA07G053490PF00023Ank2783039.5e-1245.2
TkA07G053490PF13606Ank_32783022.3e-0937.3
TkA07G053490PF13637Ank_42833339.9e-0832.8
TkA07G053490PF00023Ank3133349.5e-1245.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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