TkA07G050250 | RubberDandelionOmics

Gene overview

TkA07G050250

Reference: TK1151 Chr: Chr07 Coordinates: 13334849-13340560 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1383 bp · TkA07G050250|TK1151|cDNA

AAGCAAACAGTGTGTTTATATTCCTATTATAAATACAGACACAATATAGATATATAACCAGCAACAATTTTTTCTTGAGCTCAAATTCTCCAATGGCGATTTCACCAACTTTTCTTCCCATTTTACCCTTGTTGATTCTGTTAGCTTTTTGTACCTCGCATACTAGTGGGTGTTACCAATCGATCATAAGTTTTGGTGATTCTTTAGCTGATACCGGAAACCTAAAGCAACTCGCCGTTAAATCAAACAGCCGGCCACCA...

CDS

Download CDS FASTA

912 bp · TkA07G050250|TK1151|CDS

ATGCCGTTAATACCACCATACGAGGGTGTTAAAACAAACGGTATGTTGGAGAGAGGGCAAGGAGTAAACTTCGCAGTAGCTGGTGCAACTGCATTAGATTCAGCGTTTCATGAAGCACAAGGGGTTGTAAATCCATACACAAATGCATCTTTGGGTGTTCAATTGGAATGGTTCAAAGAATCATTGCCTTTTATGTGTGGCGCCCCCTCAGACTGCAAAAAATTGATACAAAACTCGTTAATTCTTATGGGGGAGATCGG...

Protein

Download Protein FASTA

303 aa · TkA07G050250|TK1151|PROTEIN

MPLIPPYEGVKTNGMLERGQGVNFAVAGATALDSAFHEAQGVVNPYTNASLGVQLEWFKESLPFMCGAPSDCKKLIQNSLILMGEIGGNDYNHAVIAGKPISELKSYVPLVINTIGSAINELIELGAETLVIPGNLPIGCSAAYLTIYYDTDWVRKDNTTGCIIELNKFAQYHNELLQTTLNQIREANPNVNIIYADYYNAAMQIFSSPEKYGFTNGALKACCGGGGPYNYNQLVDCADPSSTTCADPNTYANWDGLHLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G050250`
TK1151 ID	TkA07G050250
OH-1004 ID	LXL04_010314
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	74.500
Protein coverage (%)	TK1151 94.059 / OH-1004 35.448 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G050250

Location Chr07:13334849-13340560 (+)

Description Similar to At1g28600: GDSL esterase/lipase At1g28600

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31550`	GDSL esterase/lipase At1g31550.	No verified direct reference in this release
`At1g28580`	GDSL esterase/lipase At1g28580.	No verified direct reference in this release
`At1g28610`	GDSL esterase/lipase At1g28610.	No verified direct reference in this release
`At1g28600`	GDSL esterase/lipase At1g28600.	No verified direct reference in this release
`At1g28570`	GDSL esterase/lipase At1g28570.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010314 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005976 polysaccharide metabolic process Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

GO:0046555 acetylxylan esterase activity Molecular Function

KEGG gene cross-reference

ath:AT1G28580

ath:AT1G28590

ath:AT1G28600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.265

Rank 1 · TkA07G050250 · TK1151

Cytoplasm0.252

Rank 2 · TkA07G050250 · TK1151

Lysosome / Vacuole0.217

Rank 3 · TkA07G050250 · TK1151

Endoplasmic reticulum0.145

Rank 4 · TkA07G050250 · TK1151

Cell membrane0.060

Rank 5 · TkA07G050250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL18-269 aa

PF06908YpsA108-206 aa

PF17883MBG145-197 aa

PF13472Lipase_GDSL_2172-265 aa

PF17883MBG243-276 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G050250	`PF00657`	Lipase_GDSL	18	269	3.6e-21	77.0
TkA07G050250	`PF06908`	YpsA	108	206	0.16	12.7
TkA07G050250	`PF17883`	MBG	145	197	0.38	12.0
TkA07G050250	`PF13472`	Lipase_GDSL_2	172	265	0.0058	17.9
TkA07G050250	`PF17883`	MBG	243	276	0.38	12.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C857`	Arabidopsis thaliana	sp\|Q9C857\|GDL16_ARATH GDSL esterase/lipase At1g31550	51.400%	Swiss-Prot	High
`Q9FXJ2`	Arabidopsis thaliana	sp\|Q9FXJ2\|GDL7_ARATH GDSL esterase/lipase At1g28580	50.300%	Swiss-Prot	High
`Q9SHP6`	Arabidopsis thaliana	sp\|Q9SHP6\|GDL10_ARATH GDSL esterase/lipase At1g28610	49.200%	Swiss-Prot	Medium
`Q94F40`	Arabidopsis thaliana	sp\|Q94F40\|GDL9_ARATH GDSL esterase/lipase At1g28600	50.500%	Swiss-Prot	High
`Q9FXJ1`	Arabidopsis thaliana	sp\|Q9FXJ1\|GDL6_ARATH GDSL esterase/lipase At1g28570	50.700%	Swiss-Prot	High

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