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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G036270
Reference: TK1151 Chr: Chr07 Coordinates: 9668488-9670625 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1482 bp · TkA07G036270|TK1151|cDNA

AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAAAAATAGAAAAAAAAGGATTTATGAAACTTAGTTCCTCCACCTCACAACTAGATGAAGCTAAACCTCATAAACCTCTCTTTTCAACTCCATGGATTTATTGAAAGCAAATACTATCTAGAAAAAGATTGATATAGAGAGAGAAAGAGAAAACAAAGAGTCTTCTCTCAATGGCAACAACAACAAACGCCACCACC...

CDS

Download CDS FASTA

1128 bp · TkA07G036270|TK1151|CDS

ATGGCAACAACAACAAACGCCACCACCACCCACTATCCAGACGACTTCAAATGCCCGATTTCTCTCGAGATAATGTCGGAGCCAGTCATCCTTTCTTCCGGCCACACCTTTGACCGCTCTTCAATCCAACGTTGGCTTGACGCAGGCCACCGTACTTGCCCCATCAGCAAATTGCCCCTCTCCGACCCTCCTTCTCTTATCCCTAACCACGCCCTTCGCAGCCTTATCACCAGCTACACCGCCCTCAATTTATCAAAGCC...

Protein

Download Protein FASTA

375 aa · TkA07G036270|TK1151|PROTEIN

MATTTNATTTHYPDDFKCPISLEIMSEPVILSSGHTFDRSSIQRWLDAGHRTCPISKLPLSDPPSLIPNHALRSLITSYTALNLSKPHQNRGNSETLISNLTSKSSSPEAKLFSIEQLCQLSKHDFELRKRLTESGAVAAVLGCISRKNYITLQEKALKLLLNLSLDDDNKVGLVAEGAICSIIAALSDGESADCRATAATVLTSLAVVEVNKATIGAYPFAIRGLVTLLKEGGGRERKEAATALYALCSFPDNRRRAVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G036270
TK1151 IDTkA07G036270
OH-1004 IDLXL04_027164
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 93.067 / OH-1004 98.310
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G036270
LocationChr07:9668488-9670625 (-)
DescriptionSimilar to PUB8: U-box domain-containing protein 8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g21350 Functions as an E3 ubiquitin ligase (By similarity).
A cryptic modifier causing transient self-incompatibility in Arabidopsis thaliana.2007 · DOI: 10.1016/j.cub.2007.03.022
At1g29340 Functions as an E3 ubiquitin ligase.
The E3 ubiquitin ligase activity of arabidopsis PLANT U-BOX17 and its functional tobacco homolog ACRE276 are required for cell death and defense.2006 · DOI: 10.1105/tpc.105.039198
At5g01830 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At2g35930 E3 ubiquitin-protein ligase that negatively regulates water stress response.
Arabidopsis PUB22 and PUB23 are homologous U-Box E3 ubiquitin ligases that play combinatory roles in response to drought stress.2008 · DOI: 10.1105/tpc.108.060699
Negative regulation of PAMP-triggered immunity by an E3 ubiquitin ligase triplet in Arabidopsis.2008 · DOI: 10.1016/j.cub.2008.07.085

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027164 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002237 response to molecule of bacterial origin Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0009609 response to symbiotic bacterium Biological Process
GO:0009610 response to symbiotic fungus Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009877 nodulation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0036377 arbuscular mycorrhizal association Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0050777 negative regulation of immune response Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
KEGG gene cross-reference
ath:AT2G28830
ath:AT3G46510
ath:AT4G21350
dosa:Os06g0102700
mtr:11430446
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.717
Rank 1 · TkA07G036270 · TK1151
Cytoplasm0.359
Rank 2 · TkA07G036270 · TK1151
Cell membrane0.037
Rank 3 · TkA07G036270 · TK1151
Endoplasmic reticulum0.022
Rank 4 · TkA07G036270 · TK1151
Mitochondrion0.019
Rank 5 · TkA07G036270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04564U-box13-81 aa
PF11789zf-Nse15-55 aa
PF13923zf-C3HC4_217-55 aa
PF13639zf-RING_217-55 aa
PF13445zf-RING_UBOX18-54 aa
PF15227zf-C3HC4_418-54 aa
PF00097zf-C3HC418-54 aa
PF12678zf-rbx132-55 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G036270PF04564U-box13817.1e-1968.5
TkA07G036270PF11789zf-Nse15554.4e-0730.4
TkA07G036270PF13923zf-C3HC4_217555.1e-0523.7
TkA07G036270PF13639zf-RING_217550.02715.4
TkA07G036270PF13445zf-RING_UBOX18546.6e-0833.1
TkA07G036270PF15227zf-C3HC4_418540.003318.2
TkA07G036270PF00097zf-C3HC418540.005517.3
TkA07G036270PF12678zf-rbx132550.06414.2
TkA07G036270PF13445zf-RING_UBOX53656.6e-0833.1
TkA07G036270PF24436INTS7_N783110.001218.7
TkA07G036270PF24768ARM_ARMC5902715.9e-0936.4
TkA07G036270PF21050ARMC9_ARM961180.002518.5
TkA07G036270PF25598ARM_PUB983692.5e-1970.5
TkA07G036270PF02985HEAT1041240.02715.4
TkA07G036270PF00514Arm1281652.5e-0524.9
TkA07G036270PF13513HEAT_EZ1391720.1313.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81902Arabidopsis thalianasp|O81902|PUB8_ARATH U-box domain-containing protein 858.700%Swiss-ProtHigh
Q9C7R6Arabidopsis thalianasp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 1729.600%Swiss-ProtLow
Q9LZW3Arabidopsis thalianasp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 1628.000%Swiss-ProtLow
Q84TG3Arabidopsis thalianasp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB2327.600%Swiss-ProtLow

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