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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G035820
Reference: TK1151 Chr: Chr07 Coordinates: 9558287-9559256 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

582 bp · TkA07G035820|TK1151|cDNA

ATGCTTTGTAGAAACAGGAAGCGGAATTATGATGGAGATGATGATGATAACAACGATGAGGATGAAGGCAGATTCAAGTCCAAGAACCTCAAAGCTGAAAGGAAAAGACGCGAAAAACTCAAATCAAGAATGCTAGAATTACGATCTCTAGTTCCTAAAATAACAAATTTGAACAAAGAAACAATCATAACGGATGCTATTGATTACATTGAGGAGCTTCAAGATTCTGTCACAAATCTAACTAATGAAATTCATAAAAT...

CDS

Download CDS FASTA

582 bp · TkA07G035820|TK1151|CDS

ATGCTTTGTAGAAACAGGAAGCGGAATTATGATGGAGATGATGATGATAACAACGATGAGGATGAAGGCAGATTCAAGTCCAAGAACCTCAAAGCTGAAAGGAAAAGACGCGAAAAACTCAAATCAAGAATGCTAGAATTACGATCTCTAGTTCCTAAAATAACAAATTTGAACAAAGAAACAATCATAACGGATGCTATTGATTACATTGAGGAGCTTCAAGATTCTGTCACAAATCTAACTAATGAAATTCATAAAAT...

Protein

Download Protein FASTA

193 aa · TkA07G035820|TK1151|PROTEIN

MLCRNRKRNYDGDDDDNNDEDEGRFKSKNLKAERKRREKLKSRMLELRSLVPKITNLNKETIITDAIDYIEELQDSVTNLTNEIHKIEAELAIEQSFDILHICQEEKMKKWGIESEVEVSRINENKLWMKIVFEKKVGGFTKLIQAMSMLGIELVDTSVTTTKGAVLVTSCIEGKMLIPEQVREELVDVIKVL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G035820
TK1151 IDTkA07G035820
OH-1004 IDLXL04_027159
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 92.344
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G035820
LocationChr07:9558287-9559256 (+)
DescriptionSimilar to DYT1: Transcription factor DYT1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g21330 Transcription factor.
Regulation of Arabidopsis tapetum development and function by DYSFUNCTIONAL TAPETUM1 (DYT1) encoding a putative bHLH transcription factor.2006 · DOI: 10.1242/dev.02463
At1g10610 Transcription factor bHLH90. No verified direct reference in this release
At2g16910 Transcription factor. No verified direct reference in this release
At5g10570 Transcription factor bHLH61. No verified direct reference in this release
At3g26744 Transcriptional activator that regulates the cold-induced transcription of CBF/DREB1 genes.
SIZ1-mediated sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance in Arabidopsis.2007 · DOI: 10.1105/tpc.106.048397
SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to arabidopsis stomatal differentiation.2008 · DOI: 10.1105/tpc.108.060848

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027159 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009409 response to cold Biological Process
GO:0009555 pollen development Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009960 endosperm development Biological Process
GO:0010115 regulation of abscisic acid biosynthetic process Biological Process
GO:0010162 seed dormancy process Biological Process
GO:0010440 stomatal lineage progression Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0048317 seed morphogenesis Biological Process
KEGG gene cross-reference
ath:AT1G10610
ath:AT2G16910
ath:AT3G26744
ath:AT4G21330
dosa:Os02g0120500
osa:4328113
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.869
Rank 1 · TkA07G035820 · TK1151
Cytoplasm0.228
Rank 2 · TkA07G035820 · TK1151
Cell membrane0.033
Rank 3 · TkA07G035820 · TK1151
Endoplasmic reticulum0.022
Rank 4 · TkA07G035820 · TK1151
Lysosome / Vacuole0.009
Rank 5 · TkA07G035820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00170bZIP_13-10 aa
PF17544DUF54609-95 aa
PF11365SOGA19-60 aa
PF00170bZIP_126-60 aa
PF24922ACBP4_C28-60 aa
PF00010HLH29-74 aa
PF23177bHLH_IRO331-90 aa
PF23173bHLH_SAC5133-80 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G035820PF00170bZIP_13102.68.9
TkA07G035820PF17544DUF54609950.0713.1
TkA07G035820PF11365SOGA19600.3212.8
TkA07G035820PF00170bZIP_126602.68.9
TkA07G035820PF24922ACBP4_C28600.02415.6
TkA07G035820PF00010HLH29741.7e-0938.1
TkA07G035820PF23177bHLH_IRO331905.1e-0627.5
TkA07G035820PF23173bHLH_SAC5133800.0005420.5
TkA07G035820PF07374DUF149233730.6510.9
TkA07G035820PF08702Fib_alpha35950.1812.7
TkA07G035820PF26575HHO5_N50890.03514.8
TkA07G035820PF07032DUF1322671340.09414.0
TkA07G035820PF07374DUF1492681210.6510.9
TkA07G035820PF00170bZIP_169912.68.9
TkA07G035820PF24922ACBP4_C70960.02415.6
TkA07G035820PF11365SOGA701320.3212.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81900Arabidopsis thalianasp|O81900|DYT1_ARATH Transcription factor DYT141.700%Swiss-ProtMedium
Q0WNR2Arabidopsis thalianasp|Q0WNR2|BH090_ARATH Transcription factor bHLH9034.300%Swiss-ProtMedium
Q9ZVX2Arabidopsis thalianasp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES26.600%Swiss-ProtLow
Q9LXA9Arabidopsis thalianasp|Q9LXA9|BH061_ARATH Transcription factor bHLH6130.500%Swiss-ProtMedium
Q9LSE2Arabidopsis thalianasp|Q9LSE2|ICE1_ARATH Transcription factor ICE126.300%Swiss-ProtLow

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