TkA07G035740 | RubberDandelionOmics

Gene overview

TkA07G035740

Reference: TK1151 Chr: Chr07 Coordinates: 9517197-9518861 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1578 bp · TkA07G035740|TK1151|cDNA

ATCAATTTAATTTCAAGATTAAAGTTAAGGAATCGTAAAGTTGCCTATCATTACGAGATAACAAAATACATTTGTTTGGTTTTCCAAATCCTCCAAAGTGGCAAAGTACATTCCCTATGACCGATTCCAAAACACGAGCCAAACGCCAACAAGTCTCGATAAGCATCGAGTTTTGCTTACGACTTGCGAGTAAATTTCTTGTTTGGCTTCGGTACATCACCGGACCCTACCCCTCAATTCTCCACTACCGAAACCCTAGA...

CDS

Download CDS FASTA

1023 bp · TkA07G035740|TK1151|CDS

ATGGCCCAATCGAAGAGTGAACCAGCTAATTCTTCCTCCGGCGAAGAGGAGGAAGCTTCATCTGAAGGATCGGAGTCAGAATCGGAGACCGACAAAACATCAACACCTCCACCTTCTGCCAAGAAAACGCAACTCACCCACCATTCATTGTCCGACGAATCGGACTCAGAGTCTGAATCCGACACCGTCAAGAATCCCAAACCTTTAGCCTCAGTTCCTATGGATGATGATCAGTCGAAAAAGCCTAGATCCAAGAATAC...

Protein

Download Protein FASTA

340 aa · TkA07G035740|TK1151|PROTEIN

MAQSKSEPANSSSGEEEEASSEGSESESETDKTSTPPPSAKKTQLTHHSLSDESDSESESDTVKNPKPLASVPMDDDQSKKPRSKNTTARYSPPPVKPPTGKRPAAEVEAADPKRIKQKTVIASSAPDADNGGEKKQLFQRLWSEENEIELIQGMIDYVNEKGKDPVADVNNFHDFVKKSLHVDVNNKQVIAKVRRLKKKYENNVTRAKNTVMSSTTKKVKINVTPKLNKNRKSNVNGGVELEPEVTLTPTPTLTPTPNE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G035740`
TK1151 ID	TkA07G035740
OH-1004 ID	LXL04_027152
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G035740

Location Chr07:9517197-9518861 (+)

Description Similar to At1g61730: Probable transcription factor At1g61730

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00390`	Probable transcription factor At4g00390.	No verified direct reference in this release
`At1g61730`	Probable transcription factor At1g61730.	No verified direct reference in this release
`At2g01370`	Probable transcription factor At2g01370.	No verified direct reference in this release
`At1g11510`	Probable transcription factor At1g11510.	No verified direct reference in this release
`At5g28040`	Probable transcription factor At5g28040.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027152 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0016592 mediator complex Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

KEGG gene cross-reference

ath:AT1G11510

ath:AT1G61730

ath:AT2G01370

ath:AT4G00390

ath:AT4G25210

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.982

Rank 1 · TkA07G035740 · TK1151

Cytoplasm0.059

Rank 2 · TkA07G035740 · TK1151

Cell membrane0.019

Rank 3 · TkA07G035740 · TK1151

Endoplasmic reticulum0.014

Rank 4 · TkA07G035740 · TK1151

Plastid0.008

Rank 5 · TkA07G035740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05793TFIIF_alpha10-144 aa

PF04504GeBP-like_DBD139-216 aa

PF00815Histidinol_dh148-221 aa

PF22757GeBP-like_C194-210 aa

PF05793TFIIF_alpha206-236 aa

PF22757GeBP-like_C282-325 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G035740	`PF05793`	TFIIF_alpha	10	144	7.8	5.7
TkA07G035740	`PF04504`	GeBP-like_DBD	139	216	3e-25	89.4
TkA07G035740	`PF00815`	Histidinol_dh	148	221	0.16	11.6
TkA07G035740	`PF22757`	GeBP-like_C	194	210	8.5e-05	23.1
TkA07G035740	`PF05793`	TFIIF_alpha	206	236	7.8	5.7
TkA07G035740	`PF22757`	GeBP-like_C	282	325	8.5e-05	23.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23063`	Arabidopsis thaliana	sp\|O23063\|STKLP_ARATH Probable transcription factor At4g00390	39.800%	Swiss-Prot	Low
`Q9SYA9`	Arabidopsis thaliana	sp\|Q9SYA9\|STKLD_ARATH Probable transcription factor At1g61730	44.000%	Swiss-Prot	Low
`Q9ZU30`	Arabidopsis thaliana	sp\|Q9ZU30\|STKLF_ARATH Probable transcription factor At2g01370	47.800%	Swiss-Prot	Low
`C0SUU6`	Arabidopsis thaliana	sp\|C0SUU6\|STKLA_ARATH Probable transcription factor At1g11510	47.300%	Swiss-Prot	Low
`F4K5T4`	Arabidopsis thaliana	sp\|F4K5T4\|STKLU_ARATH Probable transcription factor At5g28040	36.300%	Swiss-Prot	Low

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