Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3391 bp · TkA07G030530|TK1151|cDNA
AGAGCCCAGTTCATCTCCGAAGAAGTCCGTCCTCTCCCCTCAAACTCCCCCGGGTTTCAAACCTTCAAGTGTTCAACTGCCGCCGGAAAATTCATCAGTGACCACTCAGCGATGGAGTTCGAAAAGAGAAAGAAAGCCACCTTAACCACCATGAGTTCACCGGAGCCGGATAAGTCACCAAAAGGAGACATAGACATACCCATAGTCCCACTCCTCAAAACCCTCAATTCTCACCCATCGTACTTCACCACCAGTTCTTG...
3174 bp · TkA07G030530|TK1151|CDS
AGAGCCCAGTTCATCTCCGAAGAAGTCCGTCCTCTCCCCTCAAACTCCCCCGGGTTTCAAACCTTCAAGTGTTCAACTGCCGCCGGAAAATTCATCAGTGACCACTCAGCGATGGAGTTCGAAAAGAGAAAGAAAGCCACCTTAACCACCATGAGTTCACCGGAGCCGGATAAGTCACCAAAAGGAGACATAGACATACCCATAGTCCCACTCCTCAAAACCCTCAATTCTCACCCATCGTACTTCACCACCAGTTCTTG...
Protein
Download Protein FASTA1057 aa · TkA07G030530|TK1151|PROTEIN
RAQFISEEVRPLPSNSPGFQTFKCSTAAGKFISDHSAMEFEKRKKATLTTMSSPEPDKSPKGDIDIPIVPLLKTLNSHPSYFTTSSCSGRISILSTPTAATTTTVKKKAKGGNWVFITHEPADANSVQNLIFPPNPTADSIQSDNQGNLVFRFEPLIIAVECKDVLSAQKLVSLAISCGFRESGITNVNNKRVIVAIRCSIRLEVPLGDTNNIMVSKEYLNYLVGIANEKMEANRKRSDSFHDVLLKNELFMRPDNTLSY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G030530 |
|---|---|
| TK1151 ID | TkA07G030530 |
| OH-1004 ID | LXL04_027078 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 96.442Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G030530 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:8134740-8139721 (-) | ||||||||||||
| Description | Similar to At4g04670: tRNA wybutosine-synthesizing protein 2/3/4 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0030488 tRNA methylation Biological Process GO:0031591 wybutosine biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0008175 tRNA methyltransferase activity Molecular Function GO:0102522 tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT4G04670 bta:516516 dosa:Os07g0515000 dre:564925 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02676TYW342-245 aaPF24981Beta-prop_ATRN-LZTR1326-350 aaPF24681Kelch_KLHDC2_KLHL20_DRC7327-500 aaPF13415Beta-prop_FBX42327-505 aaPF13418Beta-prop_TYW4327-348 aaPF13854Kelch_HCF335-399 aaPF07646Kelch_2341-348 aaPF01344Kelch_1342-368 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G030530 | PF02676 | TYW3 | 42 | 245 | 6.8e-67 | 225.6 |
| TkA07G030530 | PF24981 | Beta-prop_ATRN-LZTR1 | 326 | 350 | 1.1e-34 | 120.7 |
| TkA07G030530 | PF24681 | Kelch_KLHDC2_KLHL20_DRC7 | 327 | 500 | 5.5e-74 | 248.9 |
| TkA07G030530 | PF13415 | Beta-prop_FBX42 | 327 | 505 | 1.5e-42 | 146.3 |
| TkA07G030530 | PF13418 | Beta-prop_TYW4 | 327 | 348 | 1.5e-24 | 88.0 |
| TkA07G030530 | PF13854 | Kelch_HCF | 335 | 399 | 7.7e-23 | 82.0 |
| TkA07G030530 | PF07646 | Kelch_2 | 341 | 348 | 4.1e-21 | 74.5 |
| TkA07G030530 | PF01344 | Kelch_1 | 342 | 368 | 8.5e-27 | 93.0 |
| TkA07G030530 | PF24981 | Beta-prop_ATRN-LZTR1 | 344 | 442 | 1.1e-34 | 120.7 |
| TkA07G030530 | PF25210 | Kelch_FKB95 | 365 | 476 | 5.6e-16 | 59.7 |
| TkA07G030530 | PF13418 | Beta-prop_TYW4 | 379 | 613 | 1.5e-24 | 88.0 |
| TkA07G030530 | PF01344 | Kelch_1 | 381 | 423 | 8.5e-27 | 93.0 |
| TkA07G030530 | PF07646 | Kelch_2 | 385 | 424 | 4.1e-21 | 74.5 |
| TkA07G030530 | PF24996 | NANM | 386 | 502 | 1.3e-09 | 38.1 |
| TkA07G030530 | PF25852 | DUF6242_C | 392 | 474 | 6.8e-07 | 29.9 |
| TkA07G030530 | PF13964 | Beta-prop_Calicin | 395 | 521 | 4.4e-08 | 33.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.