Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2260 bp · TkA07G029270|TK1151|cDNA
TTAAAACTTAAAACGTTAGGGGCCAATTGTGCAGTAATGCAAAATTTATAAGTACGGGGAAGTGTGGGGGGAAAAGAACCAAGACCGCCGTCGTCGATAACCTAACGAGCAAAAACCCTTTGCCGCCTGCTCTTCACCTTCTCCGACACAGTAATCATGGGGGACGTAGTACAATACAAGCTCGAACGCATGGTCCCTGAGCTCGACGACCTTGAGCGCCGTGGATTGTTTACTCGCCGTGAGATTGCCGAAATCGTCAA...
1950 bp · TkA07G029270|TK1151|CDS
ATGGGGGACGTAGTACAATACAAGCTCGAACGCATGGTCCCTGAGCTCGACGACCTTGAGCGCCGTGGATTGTTTACTCGCCGTGAGATTGCCGAAATCGTCAAACAACGCCGGAAGTTCGAATTCAGACTCGTACGTCCAAGTCCTTTGAAACCGGATTACTTAGCGTACATCGACTACGAGAAATCTGTGGATGCACTCCGTCTCCTCCGTAAGAAAGCTATGTTGCGTAAGCTCAGTAAGGAGAGTGAAGACGGAGA...
Protein
Download Protein FASTA649 aa · TkA07G029270|TK1151|PROTEIN
MGDVVQYKLERMVPELDDLERRGLFTRREIAEIVKQRRKFEFRLVRPSPLKPDYLAYIDYEKSVDALRLLRKKAMLRKLSKESEDGEGTVRKPKMKQSVSDFSMISRIVDIYRQATNRFKGDIQLWFQYLEFCRQRRNGHMKKVLAQVIRFHPKVPGVWIYAASWEFDHNLNSTAARALMQSGLRSCPTSESLWVEYLRMELTYLNKLSARRSALGEDVAPLVKPHQNPEDKQWRDENKELFMPIEEETKDYQELDLQNE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G029270 |
|---|---|
| TK1151 ID | TkA07G029270 |
| OH-1004 ID | LXL04_027062 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.400 |
| Protein coverage (%) | TK1151 99.076 / OH-1004 43.241Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G029270 |
|---|---|
| Location | Chr07:7836172-7838918 (-) |
| Description | Similar to UTP6: U3 small nucleolar RNA-associated protein 6 homolog |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0000472 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0030490 maturation of SSU-rRNA Biological Process GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005694 chromosome Cellular Component GO:0005730 nucleolus Cellular Component GO:0030686 90S preribosome Cellular Component GO:0032040 small-subunit processome Cellular Component GO:0034388 Pwp2p-containing subcomplex of 90S preribosome Cellular Component |
| KEGG gene cross-reference | hsa:55813 mmu:216987 sce:YDR449C These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08640U3_assoc_69-84 aaPF23240HAT_PRP39_N104-139 aaPF05843Suf104-198 aaPF23233HAT_Syf1_CNRKL1_N105-139 aaPF23241HAT_PRP39_C107-201 aaPF13428TPR_14108-131 aaPF24892UTP6_C114-179 aaPF13428TPR_14125-163 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G029270 | PF08640 | U3_assoc_6 | 9 | 84 | 4e-25 | 88.2 |
| TkA07G029270 | PF23240 | HAT_PRP39_N | 104 | 139 | 1.3e-19 | 71.6 |
| TkA07G029270 | PF05843 | Suf | 104 | 198 | 7.1e-07 | 28.9 |
| TkA07G029270 | PF23233 | HAT_Syf1_CNRKL1_N | 105 | 139 | 4.3e-13 | 50.1 |
| TkA07G029270 | PF23241 | HAT_PRP39_C | 107 | 201 | 4.6e-07 | 30.7 |
| TkA07G029270 | PF13428 | TPR_14 | 108 | 131 | 1.3e-11 | 44.7 |
| TkA07G029270 | PF24892 | UTP6_C | 114 | 179 | 3.7e-28 | 99.9 |
| TkA07G029270 | PF13428 | TPR_14 | 125 | 163 | 1.3e-11 | 44.7 |
| TkA07G029270 | PF29376 | PRP6_TPR | 134 | 215 | 9.8e-08 | 31.8 |
| TkA07G029270 | PF23240 | HAT_PRP39_N | 141 | 207 | 1.3e-19 | 71.6 |
| TkA07G029270 | PF13428 | TPR_14 | 157 | 199 | 1.3e-11 | 44.7 |
| TkA07G029270 | PF23233 | HAT_Syf1_CNRKL1_N | 159 | 210 | 4.3e-13 | 50.1 |
| TkA07G029270 | PF08640 | U3_assoc_6 | 190 | 224 | 4e-25 | 88.2 |
| TkA07G029270 | PF24892 | UTP6_C | 191 | 205 | 3.7e-28 | 99.9 |
| TkA07G029270 | PF24892 | UTP6_C | 259 | 282 | 3.7e-28 | 99.9 |
| TkA07G029270 | PF23241 | HAT_PRP39_C | 272 | 306 | 4.6e-07 | 30.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.