RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G029170
Reference: TK1151 Chr: Chr07 Coordinates: 7804985-7807295 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2102 bp · TkA07G029170|TK1151|cDNA

AAGTTTCAAGAAATAAGTATTGGGTATTTGGAAAAGGTACGAATTGGGAAAGAAGTATCGGGTATTTGGGTTGATTTGGCTTTAAAGAAAAACAGGGGCTAACGCTAAGTGTTTATCAGTGATTTTGGTGGAGTTAAGGCTAACATTAACAGAAAAGCAATTGTTTGTTTATACAGTTTATCGTTTTGTTGTACTTGGAATAATAAAATTTGTGGAAATGTGATACAGACCACGATAATTGATCTGAATGACGACTCTCG...

CDS

Download CDS FASTA

1338 bp · TkA07G029170|TK1151|CDS

ATGCCAAATAAGGTGAACATTGCTTGGAACACTCTAATTGCTGCTCATGCTCGATATGGTAATGTCAAAACCTGTGTCGATTTGTTCAATAAGATGATGATGACTGAATCATGTGATCAAGATCAATGGACATTTAGTGCCCTCATGAATGCTGCAACTGAATCTCAAGAATTTCACATTGGTTGCATGATTCATGGTCTTATCATCAAGAAAGGGTGGAACTCTGCTATTGAGTCAAACAACTCAATTCTTAGTTTCTA...

Protein

Download Protein FASTA

445 aa · TkA07G029170|TK1151|PROTEIN

MPNKVNIAWNTLIAAHARYGNVKTCVDLFNKMMMTESCDQDQWTFSALMNAATESQEFHIGCMIHGLIIKKGWNSAIESNNSILSFYAHLSSREDVVKIFESIKSPTQVSWNAIIDAQMKIGDTQKALIAFNNSPEKNIISWTSMIAGYVRNGDSEEGIRFFVDMITTTNLLPDDFSLGTVLHACSLMATLGHGKMIHSLAIRHGFNSYAYVGNGLVNMYAKCGDISASSKSFNEIIEKDLVSWNTMLIGYGLHGRGDKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G029170
TK1151 IDTkA07G029170
OH-1004 IDLXL04_027056
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)96.400
Protein coverage (%)TK1151 94.382 / OH-1004 60.844
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G029170
LocationChr07:7804985-7807295 (-)
DescriptionSimilar to PCMP-E73: Pentatricopeptide repeat-containing protein At2g36980, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g36980 Pentatricopeptide repeat-containing protein At2g36980, mitochondrial. No verified direct reference in this release
At3g25970 Putative pentatricopeptide repeat-containing protein At3g25970. No verified direct reference in this release
At1g17630 Putative pentatricopeptide repeat-containing protein At1g17630. No verified direct reference in this release
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At5g27110 Pentatricopeptide repeat-containing protein At5g27110. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027056 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0099402 plant organ development Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G22070
ath:AT2G36980
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.700
Rank 1 · TkA07G029170 · TK1151
Plastid0.140
Rank 2 · TkA07G029170 · TK1151
Nucleus0.058
Rank 3 · TkA07G029170 · TK1151
Cytoplasm0.032
Rank 4 · TkA07G029170 · TK1151
Cell membrane0.006
Rank 5 · TkA07G029170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_27-51 aa
PF01535PPR8-33 aa
PF13812PPR_38-51 aa
PF13428TPR_148-34 aa
PF10602RPN78-55 aa
PF12854PPR_19-32 aa
PF18768RNPP_C9-41 aa
PF17177PPR_long15-94 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G029170PF13041PPR_27512.3e-37127.6
TkA07G029170PF01535PPR8337.6e-38126.8
TkA07G029170PF13812PPR_38515.5e-1246.3
TkA07G029170PF13428TPR_148340.0005421.1
TkA07G029170PF10602RPN78550.1312.7
TkA07G029170PF12854PPR_19328.6e-2277.3
TkA07G029170PF18768RNPP_C9410.06113.5
TkA07G029170PF17177PPR_long15940.0003320.8
TkA07G029170PF23276TPR_24171330.001119.6
TkA07G029170PF29070MSC6_N221273.3e-1143.6
TkA07G029170PF12854PPR_141508.6e-2277.3
TkA07G029170PF01535PPR44537.6e-38126.8
TkA07G029170PF13041PPR_262782.3e-37127.6
TkA07G029170PF06694Plant_NMP1621150.0613.2
TkA07G029170PF18768RNPP_C781030.06113.5
TkA07G029170PF01535PPR811047.6e-38126.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SJK9Arabidopsis thalianasp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protein At2g36980, mitochondrial46.700%Swiss-ProtMedium
Q9LU94Arabidopsis thalianasp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g2597032.900%Swiss-ProtMedium
Q9LNP2Arabidopsis thalianasp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g1763030.700%Swiss-ProtMedium
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365030.200%Swiss-ProtMedium
O04659Arabidopsis thalianasp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g2711030.000%Swiss-ProtMedium

JBrowse

View in Genome Browser