RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G026960
Reference: TK1151 Chr: Chr07 Coordinates: 7277972-7282864 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2605 bp · TkA07G026960|TK1151|cDNA

AAAAATAATAATTTTGAGTTTCTTCGCCGACACCTTCACTCTGTGTTCTTCCTACCTCAGTCCCTTTCTCTCTCTTCATTACTCTGTAAACCAAGCTTCGAATCTCTCTCTCTTTCTCTCTCTAAATGGCAAAACCCACTTCATTTTCTTCATCACAACCCTTCTGTTACTGCATGTCTTCCTCTAGGTCAAACTCTATTTGATGATCACTGCTTGAAAACATCCGAAAATGGTGACAAATCGGTGCGATCAGTTTCTTC...

CDS

Download CDS FASTA

2157 bp · TkA07G026960|TK1151|CDS

ATGGTGACAAATCGGTGCGATCAGTTTCTTCTACTGAAGTTCGTAGCGGTGATCTTCGTTTCCTTGAGTTTTGTTCTCGGCACTACTGATCCCAGCGACGTTCAAGCCTTACAAGTTTTGTACACATCTTTGAACAATGCTGCACAGCTAACAAATTGGAAAGGCAATACTGGTGGTGGTGGTGGTGACCCATGTGGTGAGTCATGGAAAGGGGTCACCTGTGAGGGTAGTTCTGTAATTTCCATTCAACTGCCTGGTTT...

Protein

Download Protein FASTA

718 aa · TkA07G026960|TK1151|PROTEIN

MVTNRCDQFLLLKFVAVIFVSLSFVLGTTDPSDVQALQVLYTSLNNAAQLTNWKGNTGGGGGDPCGESWKGVTCEGSSVISIQLPGLGLDGTLGYMLSGFTSLKTLDVSGNNIHDALPYQLPPNLTTLNLANNNLTGNLPYSIAMMFNLNYMNLSRNVLTQNIGDIFNNLTSLATLDLSNNNLTGDLPISLTSLSNISTFHVQNNQLTGSLNALSGLPLTDVNIANNHFNGWIPRELLSVPSFIYAGNSFDNGPAPPPPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G026960
TK1151 IDTkA07G026960
OH-1004 IDLXL04_027036
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G026960
LocationChr07:7277972-7282864 (-)
DescriptionSimilar to SRF8: Protein STRUBBELIG-RECEPTOR FAMILY 8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g22130 Protein STRUBBELIG-RECEPTOR FAMILY 8. No verified direct reference in this release
At3g14350 Protein STRUBBELIG-RECEPTOR FAMILY 7. No verified direct reference in this release
At1g53730 Protein STRUBBELIG-RECEPTOR FAMILY 6. No verified direct reference in this release
At1g78980 Protein STRUBBELIG-RECEPTOR FAMILY 5. No verified direct reference in this release
At2g20850 Not essential for epidermal patterning and not redundant with STRUBBELIG.
The role of the SCRAMBLED receptor-like kinase in patterning the Arabidopsis root epidermis.2007 · DOI: 10.1016/j.ydbio.2006.09.009
Molecular characterisation of the STRUBBELIG-RECEPTOR FAMILY of genes encoding putative leucine-rich repeat receptor-like kinases in Arabidopsis thaliana.2007 · DOI: 10.1186/1471-2229-7-16

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027036 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G53730
ath:AT1G78980
ath:AT2G20850
ath:AT3G14350
ath:AT4G22130
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.873
Rank 1 · TkA07G026960 · TK1151
Cytoplasm0.073
Rank 2 · TkA07G026960 · TK1151
Endoplasmic reticulum0.071
Rank 3 · TkA07G026960 · TK1151
Nucleus0.055
Rank 4 · TkA07G026960 · TK1151
Lysosome / Vacuole0.023
Rank 5 · TkA07G026960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_231-74 aa
PF12799LRR_435-46 aa
PF25184YxzE54-66 aa
PF23952LRR_EndoS82-111 aa
PF13855LRR_896-113 aa
PF25013LRR_Zer-196-186 aa
PF12799LRR_497-113 aa
PF13516LRR_6101-115 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G026960PF08263LRRNT_231743.3e-0937.6
TkA07G026960PF12799LRR_435463.4e-0627.8
TkA07G026960PF25184YxzE54660.06515.0
TkA07G026960PF23952LRR_EndoS821111.310.0
TkA07G026960PF13855LRR_8961131.9e-1041.0
TkA07G026960PF25013LRR_Zer-1961863.6e-0524.7
TkA07G026960PF12799LRR_4971133.4e-0627.8
TkA07G026960PF13516LRR_61011150.1912.6
TkA07G026960PF13855LRR_81021591.9e-1041.0
TkA07G026960PF00560LRR_11021198.3e-1037.6
TkA07G026960PF13855LRR_81231831.9e-1041.0
TkA07G026960PF12799LRR_41231393.4e-0627.8
TkA07G026960PF13516LRR_61231370.1912.6
TkA07G026960PF00560LRR_11241448.3e-1037.6
TkA07G026960PF23598LRR_141252216.2e-0522.6
TkA07G026960PF23952LRR_EndoS1401811.310.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6R2J8Arabidopsis thalianasp|Q6R2J8|SRF8_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 865.100%Swiss-ProtHigh
Q9LUL4Arabidopsis thalianasp|Q9LUL4|SRF7_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 750.200%Swiss-ProtHigh
Q9C8M9Arabidopsis thalianasp|Q9C8M9|SRF6_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 650.300%Swiss-ProtHigh
Q6R2K1Arabidopsis thalianasp|Q6R2K1|SRF5_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 544.100%Swiss-ProtMedium
Q06BH3Arabidopsis thalianasp|Q06BH3|SRF1_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 141.500%Swiss-ProtMedium

JBrowse

View in Genome Browser