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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G022240
Reference: TK1151 Chr: Chr07 Coordinates: 6048623-6051607 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2891 bp · TkA07G022240|TK1151|cDNA

CTCCACCTCATCAATGGCGTTTACCCAACGCCCACCCATACCGGGCGGCCTTAAGAATAATAAATACATCAATTCAATAGTACAGTATTAAACTTAATTGGTCTTTTCCTTAGTAACGTGAGGGAGCAAGAAGATCGTCTTTCCTCCTGATACACAACAGTGCTTCTTCCTGATCGAGAAAGCTTCTCCATATCCTTGCTTCTTCAATATCGCAGCTCCTATCTACCAGCTCATCCAAATCCCTTTGGCATACACTGAAA...

CDS

Download CDS FASTA

2127 bp · TkA07G022240|TK1151|CDS

ATGATCCAAAGGCGTTTTCTGTTAATTCACTGCCGAACATACTGCTCAAATGTTGCGATTTCAGAGAATCGTCATATTGCAAGGTATGGCCGCCTTGGCCAAATTGACAACGCTCGCCAAGTATTTGATGGTTTACGGGAAAAGAACATTGTTTCTTGGAACTCCATCGTTGCATGTTATTTCCAAAACAACCAACCTACCGAAGCCCGAAACCTGTTCGAACAAATGCCTGAAAGAAGCACTGTTTCCTGGAATGGTTT...

Protein

Download Protein FASTA

708 aa · TkA07G022240|TK1151|PROTEIN

MIQRRFLLIHCRTYCSNVAISENRHIARYGRLGQIDNARQVFDGLREKNIVSWNSIVACYFQNNQPTEARNLFEQMPERSTVSWNGLISGYVKNRMVKDAREVFDKMPVRNVISWTAMIRGYVEEGLVSEAETLFWKMPVRNVVSWTVMLGGLIQDNQIDKARQLFDTMPLKDVVAWTSMVGGYSQTGRLAEARQLFDEMPEKNVVSWTTMISGYVQHHHVDIARKLFEVMPNKNEVSWTAMLMGYTQSGRMTDAMDLFN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G022240
TK1151 IDTkA07G022240
OH-1004 IDLXL04_026972
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 98.883
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G022240
LocationChr07:6048623-6051607 (+)
DescriptionSimilar to PCMP-H69: Pentatricopeptide repeat-containing protein At1g56690, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g56690 Pentatricopeptide repeat-containing protein At1g56690, mitochondrial. No verified direct reference in this release
At1g09410 Pentatricopeptide repeat-containing protein At1g09410, mitochondrial. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At4g16835 Pentatricopeptide repeat-containing protein At4g16835, mitochondrial. No verified direct reference in this release
At1g20230 Pentatricopeptide repeat-containing protein At1g20230. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026972 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010214 seed coat development Biological Process
GO:0048731 system development Biological Process
GO:0140547 acquisition of seed longevity Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G09410
ath:AT1G56690
ath:AT4G02750
ath:AT4G16835
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.616
Rank 1 · TkA07G022240 · TK1151
Plastid0.219
Rank 2 · TkA07G022240 · TK1151
Nucleus0.070
Rank 3 · TkA07G022240 · TK1151
Cytoplasm0.039
Rank 4 · TkA07G022240 · TK1151
Peroxisome0.007
Rank 5 · TkA07G022240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_226-50 aa
PF01535PPR27-50 aa
PF12854PPR_129-43 aa
PF13428TPR_1429-48 aa
PF07719TPR_229-43 aa
PF13432TPR_1629-75 aa
PF13174TPR_629-48 aa
PF13181TPR_829-42 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G022240PF13041PPR_226505.4e-85280.1
TkA07G022240PF01535PPR27503.6e-101325.3
TkA07G022240PF12854PPR_129431.3e-57191.9
TkA07G022240PF13428TPR_1429489.2e-1039.0
TkA07G022240PF07719TPR_229436.3e-0523.5
TkA07G022240PF13432TPR_1629750.03615.2
TkA07G022240PF13174TPR_629480.05714.8
TkA07G022240PF13181TPR_829420.06414.2
TkA07G022240PF14559TPR_1933793.9e-1350.2
TkA07G022240PF23276TPR_2434752.3e-1144.4
TkA07G022240PF00619CARD37795.2e-0523.9
TkA07G022240PF13424TPR_1237750.04214.8
TkA07G022240PF05871ESCRT-II401490.1313.2
TkA07G022240PF13041PPR_248805.4e-85280.1
TkA07G022240PF13812PPR_348782.6e-1969.8
TkA07G022240PF05843Suf48740.0002420.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FXB9Arabidopsis thalianasp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690, mitochondrial60.800%Swiss-ProtMedium
Q56XI1Arabidopsis thalianasp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410, mitochondrial55.600%Swiss-ProtMedium
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275050.900%Swiss-ProtMedium
Q9M4P3Arabidopsis thalianasp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial49.400%Swiss-ProtMedium
Q9LNU6Arabidopsis thalianasp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g2023046.000%Swiss-ProtMedium

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