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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G022210
Reference: TK1151 Chr: Chr07 Coordinates: 6037013-6039824 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1897 bp · TkA07G022210|TK1151|cDNA

TTACGACATGATTGAAGTTATTCGTTACCCATCGAATATGTTATATTGCTAAGCCCAGCCCAGAGGTACCTACACATAGACCCTCGACAACTGGGGCCCAATAAGAAGCCCAAAAAAGATGTTCTTCAACGATTGCGATTTTACGATTACTAGCAGAGGCGGGAGGAGTGACAGATGCTTAGATTGGACGGGAATTAAAACGAAATCGCGAATCAGATTCATGACAAAATCCGAGCAAGCAAAGACACCGAAACACGAAG...

CDS

Download CDS FASTA

1485 bp · TkA07G022210|TK1151|CDS

ATGTTCTTCAACGATTGCGATTTTACGATTACTAGCAGAGGCGGGAGGAGTGACAGATGCTTAGATTGGACGGGAATTAAAACGAAATCGCGAATCAGATTCATGACAAAATCCGAGCAAGCAAAGACACCGAAACACGAAGATGGAGTCGATACGATCAGTAAAATGCCAGATCATGTTCTTTTATCGATTCTCTCACGTCTTCCAGGTACAGAAGAAGTAATCCGAACCAGCATTTTATCAACACGATGGAGGTATAT...

Protein

Download Protein FASTA

494 aa · TkA07G022210|TK1151|PROTEIN

MFFNDCDFTITSRGGRSDRCLDWTGIKTKSRIRFMTKSEQAKTPKHEDGVDTISKMPDHVLLSILSRLPGTEEVIRTSILSTRWRYIWTSVPSIDISCTRKPLYSDLDGFSEFVYWVLLNKPLDLDSFRLFCADYYNMATIRQWIHATVMRKVKLLDLTFCPVDVSEDIQLPHSLVTCDSLEVFKLCVFNSRLCVPNITGFQALRVLHLRGVDLFDDNLVKYFLESSPLLEDLSLINCRAYKLVISSPKLKYLRIDTRVR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G022210
TK1151 IDTkA07G022210
OH-1004 IDLXL04_026970
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)97.900
Protein coverage (%)TK1151 95.142 / OH-1004 58.385
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G022210
LocationChr07:6037013-6039824 (+)
DescriptionSimilar to At1g78760: Putative F-box/FBD/LRR-repeat protein At1g78760
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g78760 Putative F-box/FBD/LRR-repeat protein At1g78760. No verified direct reference in this release
At1g69630 F-box/LRR-repeat protein 13. No verified direct reference in this release
At1g78750 F-box/FBD/LRR-repeat protein At1g78750. No verified direct reference in this release
At1g66290 Putative F-box/FBD/LRR-repeat protein At1g66290. No verified direct reference in this release
At1g66310 FBD-associated F-box protein At1g66310. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026970 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G66290
ath:AT1G69630
ath:AT1G78750
ath:AT1G78760
ath:AT1G78840
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.845
Rank 1 · TkA07G022210 · TK1151
Cytoplasm0.209
Rank 2 · TkA07G022210 · TK1151
Cell membrane0.040
Rank 3 · TkA07G022210 · TK1151
Endoplasmic reticulum0.035
Rank 4 · TkA07G022210 · TK1151
Plastid0.017
Rank 5 · TkA07G022210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box53-92 aa
PF12937F-box-like53-87 aa
PF07723LRR_2123-137 aa
PF24758LRR_At5g56370142-255 aa
PF12799LRR_4168-186 aa
PF12799LRR_4197-211 aa
PF07723LRR_2204-221 aa
PF12799LRR_4212-238 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G022210PF00646F-box53928.6e-0832.5
TkA07G022210PF12937F-box-like53870.001119.4
TkA07G022210PF07723LRR_21231374.78.7
TkA07G022210PF24758LRR_At5g563701422553.8e-1350.3
TkA07G022210PF12799LRR_41681860.1912.8
TkA07G022210PF12799LRR_41972110.1912.8
TkA07G022210PF07723LRR_22042214.78.7
TkA07G022210PF12799LRR_42122380.1912.8
TkA07G022210PF08387FBD2192340.0005720.4
TkA07G022210PF07723LRR_22492664.78.7
TkA07G022210PF24758LRR_At5g563702763133.8e-1350.3
TkA07G022210PF12799LRR_42802930.1912.8
TkA07G022210PF08387FBD2862940.0005720.4
TkA07G022210PF08387FBD2993110.0005720.4
TkA07G022210PF24758LRR_At5g563703314313.8e-1350.3
TkA07G022210PF12799LRR_43463710.1912.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZV94Arabidopsis thalianasp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g7876027.900%Swiss-ProtLow
Q9FWZ1Arabidopsis thalianasp|Q9FWZ1|FBL13_ARATH F-box/LRR-repeat protein 1330.700%Swiss-ProtMedium
Q9ZV93Arabidopsis thalianasp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g7875026.900%Swiss-ProtLow
Q9C8Y8Arabidopsis thalianasp|Q9C8Y8|FDL7_ARATH Putative F-box/FBD/LRR-repeat protein At1g6629026.400%Swiss-ProtLow
Q9C8Y6Arabidopsis thalianasp|Q9C8Y6|FBD5_ARATH FBD-associated F-box protein At1g6631028.400%Swiss-ProtLow

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