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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G021470
Reference: TK1151 Chr: Chr07 Coordinates: 5830344-5831273 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

900 bp · TkA07G021470|TK1151|cDNA

ATGTTGGAGAGATGTGGGTTAGGGGGAAGTGGGTATAATGTGACTAAAAGCTTGCACGCCACGTGTGGGGTTCAGCTGCCGGTGCCAGTGCCGGCGGCGACCGCCGTGAACTCCAGTTGGATCGGTTACGTCGCGGTTTGCAACGACGAAGAAGAGATCGCGAGATTAGGCCGGAGAGACGTAGTGATTGCGTACAGGGGAACCGCCACGTGTCTTGAGTGGGTCGAGAATCTACGAGCCACGTTAACATCGTTGCCGAA...

CDS

Download CDS FASTA

900 bp · TkA07G021470|TK1151|CDS

ATGTTGGAGAGATGTGGGTTAGGGGGAAGTGGGTATAATGTGACTAAAAGCTTGCACGCCACGTGTGGGGTTCAGCTGCCGGTGCCAGTGCCGGCGGCGACCGCCGTGAACTCCAGTTGGATCGGTTACGTCGCGGTTTGCAACGACGAAGAAGAGATCGCGAGATTAGGCCGGAGAGACGTAGTGATTGCGTACAGGGGAACCGCCACGTGTCTTGAGTGGGTCGAGAATCTACGAGCCACGTTAACATCGTTGCCGAA...

Protein

Download Protein FASTA

299 aa · TkA07G021470|TK1151|PROTEIN

MLERCGLGGSGYNVTKSLHATCGVQLPVPVPAATAVNSSWIGYVAVCNDEEEIARLGRRDVVIAYRGTATCLEWVENLRATLTSLPNDVAGERKKAMVQKGFLSMYTTATPTCPSLRDMVREEIARIIGKYGDEPLSVTITGHSLGAALATLTAYDITSKFKQSPMVTVVSFGGPRVGNRNFRSQLENSGTRILRIVNSTDVITKVPGFLVDDSSGISASKVHRVEESDWFRYADVGKELRLCSNASPYLTRSDFATCHD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G021470
TK1151 IDTkA07G021470
OH-1004 IDLXL04_026964
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)95.800
Protein coverage (%)TK1151 100.000 / OH-1004 70.872
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G021470
LocationChr07:5830344-5831273 (-)
DescriptionSimilar to DAD1: Phospholipase A(1) DAD1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g44810 Sn-1-specific phospholipase that releases free fatty acids from phospholipids. No verified direct reference in this release
At4g16820 Acylhydrolase that catalyzes the hydrolysis of phosphatidylcholine at the sn-1 position. No verified direct reference in this release
At2g30550 Acylhydrolase with broad specificity. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2WY00 Phospholipase that releases free fatty acids from phospholipids. No verified direct reference in this release
Os01g0900400 Phospholipase that releases free fatty acids from phospholipids. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026964 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009611 response to wounding Biological Process
GO:0009695 jasmonic acid biosynthetic process Biological Process
GO:0009901 anther dehiscence Biological Process
GO:0010152 pollen maturation Biological Process
GO:0016042 lipid catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004620 glycerophospholipase activity Molecular Function
GO:0004806 triacylglycerol lipase activity Molecular Function
GO:0008970 glycerophospholipid phospholipase A1 activity Molecular Function
KEGG gene cross-reference
ath:AT1G06800
ath:AT1G51440
ath:AT2G30550
ath:AT2G44810
ath:AT4G16820
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.430
Rank 1 · TkA07G021470 · TK1151
Cytoplasm0.275
Rank 2 · TkA07G021470 · TK1151
Nucleus0.110
Rank 3 · TkA07G021470 · TK1151
Lysosome / Vacuole0.094
Rank 4 · TkA07G021470 · TK1151
Cell membrane0.091
Rank 5 · TkA07G021470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11187Mbeg1-like57-198 aa
PF26363Phospholipase-like60-83 aa
PF01764Lipase_362-209 aa
PF00756Esterase106-163 aa
PF00975Thioesterase109-160 aa
PF02230Abhydrolase_2115-203 aa
PF12697Abhydrolase_6117-195 aa
PF07819PGAP1118-175 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G021470PF11187Mbeg1-like571980.008416.2
TkA07G021470PF26363Phospholipase-like60830.0003220.7
TkA07G021470PF01764Lipase_3622092.7e-36125.2
TkA07G021470PF00756Esterase1061630.2112.0
TkA07G021470PF00975Thioesterase1091600.0414.8
TkA07G021470PF02230Abhydrolase_21152030.1412.7
TkA07G021470PF12697Abhydrolase_61171950.004518.4
TkA07G021470PF07819PGAP11181750.0813.4
TkA07G021470PF05057DUF6761202010.112.8
TkA07G021470PF26363Phospholipase-like1241550.0003220.7
TkA07G021470PF00135COesterase1241580.06612.9
TkA07G021470PF03959FSH11352030.02315.1
TkA07G021470PF01764Lipase_32382602.7e-36125.2
TkA07G021470PF05057DUF6762672960.112.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q948R1Arabidopsis thalianasp|Q948R1|PLA11_ARATH Phospholipase A(1) DAD1, chloroplastic62.700%Swiss-ProtHigh
O23522Arabidopsis thalianasp|O23522|PLA14_ARATH Phospholipase A1-Ibeta2, chloroplastic47.500%Swiss-ProtMedium
Q3EBR6Arabidopsis thalianasp|Q3EBR6|PLA16_ARATH Phospholipase A1-Igamma2, chloroplastic40.000%Swiss-ProtMedium
A2WY00Oryza sativa subsp. indicasp|A2WY00|EG1_ORYSI Phospholipase A1 EG1, chloroplastic/mitochondrial41.200%Swiss-ProtMedium
Q8S1D9Oryza sativa subsp. japonicasp|Q8S1D9|EG1_ORYSJ Phospholipase A1 EG1, chloroplastic/mitochondrial41.200%Swiss-ProtMedium

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