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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G020510
Reference: TK1151 Chr: Chr07 Coordinates: 5539790-5542743 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1380 bp · TkA07G020510|TK1151|cDNA

ATGGAGAACTCCAAGCGAGCGAACACATCTGACCATGAAGACGCTGTTGATATGATCAGTAACTTACCAGATCCCATTCTTCACTTGATTCTTTCACGTCTTCCAACTACAGAAGAACTAATTCGAACCAGCATTTTGTCTTCTCGATGGAGGTATTTGTGGACTTCAATTCCCTCCATTGACATAGACTATTCTAGAGGATTGAAATTCGAATGGAACAAATTCAAAACGTTTGTGGATCATGTTTTATCAAACAATCC...

CDS

Download CDS FASTA

1380 bp · TkA07G020510|TK1151|CDS

ATGGAGAACTCCAAGCGAGCGAACACATCTGACCATGAAGACGCTGTTGATATGATCAGTAACTTACCAGATCCCATTCTTCACTTGATTCTTTCACGTCTTCCAACTACAGAAGAACTAATTCGAACCAGCATTTTGTCTTCTCGATGGAGGTATTTGTGGACTTCAATTCCCTCCATTGACATAGACTATTCTAGAGGATTGAAATTCGAATGGAACAAATTCAAAACGTTTGTGGATCATGTTTTATCAAACAATCC...

Protein

Download Protein FASTA

459 aa · TkA07G020510|TK1151|PROTEIN

MENSKRANTSDHEDAVDMISNLPDPILHLILSRLPTTEELIRTSILSSRWRYLWTSIPSIDIDYSRGLKFEWNKFKTFVDHVLSNNPLDLDSFRLSCSSYYSRATVSQWIEAAVDRNIKQLHLSFSSDDWYKSIKLPPCLETCDSLEVLRLFLNERYLILPKFTGFPGLKVLELNNVDLSHKQCLVKSFLQSCPLLEDLSLIDCVINRRKLYYEDTLCGCIKIDCPKLVFFELGAFVALMYKFKSFGSLKTAVIHPEEYP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G020510
TK1151 IDTkA07G020510
OH-1004 IDLXL04_026956
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)47.700
Protein coverage (%)TK1151 93.682 / OH-1004 94.340
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G020510
LocationChr07:5539790-5542743 (+)
DescriptionSimilar to At1g78760: Putative F-box/FBD/LRR-repeat protein At1g78760
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g78750 F-box/FBD/LRR-repeat protein At1g78750. No verified direct reference in this release
At1g78760 Putative F-box/FBD/LRR-repeat protein At1g78760. No verified direct reference in this release
At5g25850 Putative F-box/FBD/LRR-repeat protein At5g25850. No verified direct reference in this release
At2g05300 Putative F-box/FBD/LRR-repeat protein At2g05300. No verified direct reference in this release
At5g02920 F-box/LRR-repeat protein 25. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026956 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G66290
ath:AT1G66310
ath:AT1G69630
ath:AT1G78750
ath:AT1G78760
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.689
Rank 1 · TkA07G020510 · TK1151
Cytoplasm0.336
Rank 2 · TkA07G020510 · TK1151
Cell membrane0.064
Rank 3 · TkA07G020510 · TK1151
Endoplasmic reticulum0.062
Rank 4 · TkA07G020510 · TK1151
Plastid0.022
Rank 5 · TkA07G020510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23622LRR_At1g61320_AtMIF115-53 aa
PF00646F-box19-58 aa
PF12937F-box-like19-53 aa
PF00646F-box82-102 aa
PF12937F-box-like82-104 aa
PF23622LRR_At1g61320_AtMIF192-408 aa
PF25019LRR_R13L1-DRL21101-150 aa
PF24758LRR_At5g56370107-209 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G020510PF23622LRR_At1g61320_AtMIF115539.8e-1039.1
TkA07G020510PF00646F-box19583e-0833.9
TkA07G020510PF12937F-box-like19538.1e-0523.0
TkA07G020510PF00646F-box821023e-0833.9
TkA07G020510PF12937F-box-like821048.1e-0523.0
TkA07G020510PF23622LRR_At1g61320_AtMIF1924089.8e-1039.1
TkA07G020510PF25019LRR_R13L1-DRL211011500.009516.6
TkA07G020510PF24758LRR_At5g563701072092.6e-1454.2
TkA07G020510PF25019LRR_R13L1-DRL211171760.009516.6
TkA07G020510PF00646F-box1211393e-0833.9
TkA07G020510PF08387FBD1852009.6e-0522.9
TkA07G020510PF25019LRR_R13L1-DRL212573040.009516.6
TkA07G020510PF24758LRR_At5g563702953312.6e-1454.2
TkA07G020510PF25019LRR_R13L1-DRL213173320.009516.6
TkA07G020510PF08387FBD3623999.6e-0522.9
TkA07G020510PF25019LRR_R13L1-DRL213814190.009516.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZV93Arabidopsis thalianasp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g7875036.200%Swiss-ProtLow
Q9ZV94Arabidopsis thalianasp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g7876030.900%Swiss-ProtMedium
Q3E944Arabidopsis thalianasp|Q3E944|FDL33_ARATH Putative F-box/FBD/LRR-repeat protein At5g2585033.600%Swiss-ProtLow
Q9SJ32Arabidopsis thalianasp|Q9SJ32|FDL15_ARATH Putative F-box/FBD/LRR-repeat protein At2g0530035.500%Swiss-ProtLow
Q1PE04Arabidopsis thalianasp|Q1PE04|FBL25_ARATH F-box/LRR-repeat protein 2536.400%Swiss-ProtLow

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