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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G019640
Reference: TK1151 Chr: Chr07 Coordinates: 5308573-5314457 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1650 bp · TkA07G019640|TK1151|cDNA

AAATTTATTCCCTTTTTGTATTGGACTATAATGTTACATTTCAAAACCACAAGGGTGAAACTGAAACGTACTAAAATATTCTTTCTTACCACCATCATACGAAACTCATCTCTTCTCACTATTTTCCACCAGACGACTTTTTCTATTCGTCGTAATCTCTTTTCACTTGCTCCATTATCATCATCTTCATCTCCAATTCAAATTATTGGTTTCAAATTACCCCTGGAATGGGTTCCAGCAGTAGTCGATTGGGGTCGGAT...

CDS

Download CDS FASTA

1410 bp · TkA07G019640|TK1151|CDS

ATGGGTTCCAGCAGTAGTCGATTGGGGTCGGATCGCTCTTCAAATCCCTCACGATTGAATCGAACAAAACGGAAGCTCTCTTCAATTCTACTGTGCGGTCACAGTCACACCTCCAACTCCAATTCTCCTACGTCTGCGTTAGTGTTGGAATCACCAACAAGCTCTATAGAAAACCTTACTCCTGCTAGCATCGAATCCATAACATCTGCAGGTGTGTCTACTTCCTTCTTTGATTCCGACCGTGTTTGCACAAGTTCCAA...

Protein

Download Protein FASTA

469 aa · TkA07G019640|TK1151|PROTEIN

MGSSSSRLGSDRSSNPSRLNRTKRKLSSILLCGHSHTSNSNSPTSALVLESPTSSIENLTPASIESITSAGVSTSFFDSDRVCTSSKTSESEPESCNSSSKNVAVNPVNSSQDDKASTSYNGQPSQEPITGNHRPESESELELELESVSPINERAPVNFAPITSIEENIDSDSGRNQNETVRNPDSDTRALLVLSDSFLSLRIFGSGIGIASSGSGVSSSDSDPDVISGRILVVNTGNGGSERRNAGRLFGDTSARRGIR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G019640
TK1151 IDTkA07G019640
OH-1004 IDLXL04_026947
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G019640
LocationChr07:5308573-5314457 (-)
DescriptionSimilar to RLIM: E3 ubiquitin-protein ligase RLIM
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g11680 Mediates E2-dependent protein ubiquitination in vitro. No verified direct reference in this release
At3g19910 E3 ubiquitin-ligase probably involved in organ size regulation. No verified direct reference in this release
At1g12760 Mediates E2-dependent protein ubiquitination in vitro. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0104300 Involved in the trafficking of vacuolar proteins. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026947 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0000209 protein polyubiquitination Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0015031 protein transport Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031669 cellular response to nutrient levels Biological Process
GO:0032418 lysosome localization Biological Process
GO:0034198 cellular response to amino acid starvation Biological Process
GO:0035519 protein K29-linked ubiquitination Biological Process
GO:0045786 negative regulation of cell cycle Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
KEGG gene cross-reference
dosa:Os08g0104300
hsa:26001
hsa:51132
mmu:19820
mmu:70510
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.467
Rank 1 · TkA07G019640 · TK1151
Nucleus0.364
Rank 2 · TkA07G019640 · TK1151
Cell membrane0.182
Rank 3 · TkA07G019640 · TK1151
Endoplasmic reticulum0.077
Rank 4 · TkA07G019640 · TK1151
Lysosome / Vacuole0.073
Rank 5 · TkA07G019640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23555zf-RING_Vps4124-34 aa
PF00097zf-C3HC428-35 aa
PF13639zf-RING_229-34 aa
PF17123zf-RING_1129-34 aa
PF13923zf-C3HC4_229-37 aa
PF13445zf-RING_UBOX30-35 aa
PF23412zf_RING_Vps830-35 aa
PF13639zf-RING_2404-448 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G019640PF23555zf-RING_Vps4124340.2111.9
TkA07G019640PF00097zf-C3HC428356.8e-0833.0
TkA07G019640PF13639zf-RING_229344.6e-1349.9
TkA07G019640PF17123zf-RING_1129342.1e-0937.6
TkA07G019640PF13923zf-C3HC4_229373.5e-0730.6
TkA07G019640PF13445zf-RING_UBOX30350.001619.1
TkA07G019640PF23412zf_RING_Vps830351.99.1
TkA07G019640PF13639zf-RING_24044484.6e-1349.9
TkA07G019640PF26148VPS18_RING_C4044500.004617.8
TkA07G019640PF13920zf-C3HC4_34044520.0813.5
TkA07G019640PF17120zf-RING_164044510.2611.6
TkA07G019640PF17123zf-RING_114054332.1e-0937.6
TkA07G019640PF12678zf-rbx14054481.3e-0732.4
TkA07G019640PF13923zf-C3HC4_24054473.5e-0730.6
TkA07G019640PF14634zf-RING_54054480.0002821.5
TkA07G019640PF00097zf-C3HC44064476.8e-0833.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93Z92Arabidopsis thalianasp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g1168055.300%Swiss-ProtLow
Q9LT17Arabidopsis thalianasp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related52.100%Swiss-ProtLow
Q9LN71Arabidopsis thalianasp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g1276055.300%Swiss-ProtLow
Q69U49Oryza sativa subsp. japonicasp|Q69U49|RMR2_ORYSJ Receptor homology region, transmembrane domain- and RING domain-containing protein 242.700%Swiss-ProtLow

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