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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G480100
Reference: TK1151 Chr: Chr06 Coordinates: 118974734-118978938 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2418 bp · TkA06G480100|TK1151|cDNA

CTACCACTCACTGTCTCTCTCAGAAATTTTTGCTGCTTGAATTGCAAAACCACCGGCACAATGAAGAACGTCGATTTTAGCCGGGACAAAGATCTGGCGAAGGATTTTCTTCAAAACTTCGCTGATGCAGAGGGCGAAGCGAAGTATATTAGCATCCTTCAAGATGTCGCCAATAGAAAAGTCAAAGCAATCGAAATTGACCTTGGAGACCTTTTTGATTACAAGGATTTGGACGAGGAGTTTGTGGGACGAGTTACCGA...

CDS

Download CDS FASTA

2157 bp · TkA06G480100|TK1151|CDS

ATGAAGAACGTCGATTTTAGCCGGGACAAAGATCTGGCGAAGGATTTTCTTCAAAACTTCGCTGATGCAGAGGGCGAAGCGAAGTATATTAGCATCCTTCAAGATGTCGCCAATAGAAAAGTCAAAGCAATCGAAATTGACCTTGGAGACCTTTTTGATTACAAGGATTTGGACGAGGAGTTTGTGGGACGAGTTACCGAGAACAGCCGGAGATATGTTGGAGTTTTTGCCGATGCCATTGATGAGTTGATCCCTGAGCC...

Protein

Download Protein FASTA

718 aa · TkA06G480100|TK1151|PROTEIN

MKNVDFSRDKDLAKDFLQNFADAEGEAKYISILQDVANRKVKAIEIDLGDLFDYKDLDEEFVGRVTENSRRYVGVFADAIDELIPEPTEAFQDDDLDILMTQRAEEGNDNADGTDPRQKMPPEIRRFYEVYIKASSKDQPFTIREVRASHIGQLVKISGIVTRCTDVKPLMKVAVYTCEECGFEIYQEVTARVFMPLFECPSKRCNVNRAKGSLILQLRASKFWKFQEAKLQELTEHVPKGHIPRTMTVHFRGELTRKVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G480100
TK1151 IDTkA06G480100
OH-1004 IDLXL04_018944
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)93.700
Protein coverage (%)TK1151 97.772 / OH-1004 52.138
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G480100
LocationChr06:118974734-118978938 (-)
DescriptionSimilar to MCM7: DNA replication licensing factor MCM7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g02060 Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells (By similarity). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8BMI1 Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. No verified direct reference in this release
Os12g0560700 Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018944 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000727 double-strand break repair via break-induced replication Biological Process
GO:0006270 DNA replication initiation Biological Process
GO:0006271 DNA strand elongation involved in DNA replication Biological Process
GO:0006279 premeiotic DNA replication Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0009555 pollen development Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0030174 regulation of DNA-templated DNA replication initiation Biological Process
GO:0044786 cell cycle DNA replication Biological Process
GO:0090329 regulation of DNA-templated DNA replication Biological Process
GO:1902975 mitotic DNA replication initiation Biological Process
GO:0000347 THO complex Cellular Component
KEGG gene cross-reference
ath:AT4G02060
dosa:Os12g0560700
spo:2540630
xtr:407945
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.788
Rank 1 · TkA06G480100 · TK1151
Cytoplasm0.252
Rank 2 · TkA06G480100 · TK1151
Plastid0.029
Rank 3 · TkA06G480100 · TK1151
Cell membrane0.023
Rank 4 · TkA06G480100 · TK1151
Mitochondrion0.020
Rank 5 · TkA06G480100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14551MCM_N13-98 aa
PF00004AAA36-106 aa
PF17207MCM_OB143-274 aa
PF00493MCM314-536 aa
PF05272VapE-like_dom332-390 aa
PF10236DAP3360-393 aa
PF01078Mg_chelatase366-395 aa
PF07728AAA_5371-487 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G480100PF14551MCM_N13987.5e-1039.8
TkA06G480100PF00004AAA361060.3512.1
TkA06G480100PF17207MCM_OB1432745e-35120.7
TkA06G480100PF00493MCM3145369.5e-104346.1
TkA06G480100PF05272VapE-like_dom3323900.1212.6
TkA06G480100PF10236DAP33603930.2111.5
TkA06G480100PF01078Mg_chelatase3663959.1e-0729.2
TkA06G480100PF07728AAA_53714870.0005520.7
TkA06G480100PF07726AAA_33714860.0008919.9
TkA06G480100PF00004AAA3724840.3512.1
TkA06G480100PF01078Mg_chelatase4254869.1e-0729.2
TkA06G480100PF05272VapE-like_dom4364630.1212.6
TkA06G480100PF13335Mg_chelatase_C4384630.213.0
TkA06G480100PF13335Mg_chelatase_C4715080.213.0
TkA06G480100PF17855MCM_lid5536363.5e-2382.6
TkA06G480100PF10236DAP35797050.2111.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P43299Arabidopsis thalianasp|P43299|MCM7_ARATH DNA replication licensing factor MCM781.800%Swiss-ProtHigh
B8BMI1Oryza sativa subsp. indicasp|B8BMI1|MCM7_ORYSI DNA replication licensing factor MCM784.300%Swiss-ProtHigh
Q2QNM1Oryza sativa subsp. japonicasp|Q2QNM1|MCM7_ORYSJ DNA replication licensing factor MCM784.100%Swiss-ProtHigh

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