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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G474600
Reference: TK1151 Chr: Chr06 Coordinates: 117545032-117547660 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1497 bp · TkA06G474600|TK1151|cDNA

CTACTTTTTAAGCTTGGGGTTGGAGGAACTAAGCCGCCGACTCTTGGCATTAATTTTGTTACACGGGCCGCCAGGGTGCATCAGAAGAGAACATACGAGAGCTATTTTTCAAAAGCATATAGAAAAACACCATCAATAGTTTTCATCGATGAAAACGATGTAATCGGTTCAAAAAGAGACAATGTTCAAAAGCCAATGGAAACCCGTATGGTGACACATTTAATGAAATGCATGGAATTAACCCCACGACTCAAAAAGCC...

CDS

Download CDS FASTA

1497 bp · TkA06G474600|TK1151|CDS

CTACTTTTTAAGCTTGGGGTTGGAGGAACTAAGCCGCCGACTCTTGGCATTAATTTTGTTACACGGGCCGCCAGGGTGCATCAGAAGAGAACATACGAGAGCTATTTTTCAAAAGCATATAGAAAAACACCATCAATAGTTTTCATCGATGAAAACGATGTAATCGGTTCAAAAAGAGACAATGTTCAAAAGCCAATGGAAACCCGTATGGTGACACATTTAATGAAATGCATGGAATTAACCCCACGACTCAAAAAGCC...

Protein

Download Protein FASTA

498 aa · TkA06G474600|TK1151|PROTEIN

LLFKLGVGGTKPPTLGINFVTRAARVHQKRTYESYFSKAYRKTPSIVFIDENDVIGSKRDNVQKPMETRMVTHLMKCMELTPRLKKPDALDPGIRRTGRFDHEIHLGVPDENARFQILKVVTRDLTLEGDIDLMKIARMTPGFVAADLKGLVNEAVIIVYKRIFDERELELSKENVDWHRKEFTVEELKNCSFKMSDLELAAKRVECSSKREVFSSIPNVKWEDVGGLDKLRREFDRYIIRRIKYPNQYEKYGVNLETGF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G474600
TK1151 IDTkA06G474600
OH-1004 IDLXL04_022582
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.600
Protein coverage (%)TK1151 94.980 / OH-1004 74.606
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G474600
LocationChr06:117545032-117547660 (+)
DescriptionSimilar to CDC48C: Cell division control protein 48 homolog C
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g01610 Probably functions in cell division and growth processes. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022582 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000055 ribosomal large subunit export from nucleus Biological Process
GO:0015031 protein transport Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0042273 ribosomal large subunit biogenesis Biological Process
GO:0051301 cell division Biological Process
GO:0180023 cytosolic large ribosomal subunit assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0009524 phragmoplast Cellular Component
GO:0030687 preribosome, large subunit precursor Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
ath:AT3G01610
sce:YLL034C
spo:2539968
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.576
Rank 1 · TkA06G474600 · TK1151
Nucleus0.257
Rank 2 · TkA06G474600 · TK1151
Peroxisome0.104
Rank 3 · TkA06G474600 · TK1151
Mitochondrion0.098
Rank 4 · TkA06G474600 · TK1151
Endoplasmic reticulum0.067
Rank 5 · TkA06G474600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13173AAA_1415-52 aa
PF00004AAA29-107 aa
PF00910RNA_helicase33-71 aa
PF20720nSTAND334-77 aa
PF25199nSTAND_NTPase536-71 aa
PF07728AAA_538-52 aa
PF07724AAA_238-57 aa
PF00931NB-ARC97-132 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G474600PF13173AAA_1415520.0001322.7
TkA06G474600PF00004AAA291072.7e-52177.4
TkA06G474600PF00910RNA_helicase33710.01316.7
TkA06G474600PF20720nSTAND334770.02714.9
TkA06G474600PF25199nSTAND_NTPase536710.1912.3
TkA06G474600PF07728AAA_538520.0002521.8
TkA06G474600PF07724AAA_238570.0003321.5
TkA06G474600PF00931NB-ARC971320.1212.6
TkA06G474600PF17862AAA_lid_31301661e-2176.8
TkA06G474600PF03215Rad171702140.03714.7
TkA06G474600PF25199nSTAND_NTPase52202810.1912.3
TkA06G474600PF12775AAA_72572820.2711.5
TkA06G474600PF07724AAA_22593530.0003321.5
TkA06G474600PF13191AAA_162592890.0003721.8
TkA06G474600PF06068TIP492593030.03713.9
TkA06G474600PF05496RuvB_N2603282.9e-0524.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SS94Arabidopsis thalianasp|Q9SS94|CD48C_ARATH Cell division control protein 48 homolog C57.000%Swiss-ProtHigh

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