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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G474000
Reference: TK1151 Chr: Chr06 Coordinates: 117244793-117248795 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1554 bp · TkA06G474000|TK1151|cDNA

TCTAACTCAAGAAAAAAGCCAACAAAACTACACCTTCTCCCACTTGGAAACTAGGGTTTTCTAATTACTCTTCACCAGATCCTCACTTCTCAATGAAATCCTCTGTTTCCGCTAGAAAGATCGGTGCAAATCTTTGGGAAGTACAACCTCAATTCAATTTTAACAAAAACGACGGTGATCATGGCGGTGATCATGAAGGTGATGACGGTGTCGATCGTGTTAGTCTGATTCACCACCATCGCCGGCGCCACCATCAGAAA...

CDS

Download CDS FASTA

1023 bp · TkA06G474000|TK1151|CDS

ATGAAATCCTCTGTTTCCGCTAGAAAGATCGGTGCAAATCTTTGGGAAGTACAACCTCAATTCAATTTTAACAAAAACGACGGTGATCATGGCGGTGATCATGAAGGTGATGACGGTGTCGATCGTGTTAGTCTGATTCACCACCATCGCCGGCGCCACCATCAGAAAGAGGAATTTGATGTTTCTGGTCAATTGCATGAACAACCTTATGATAGCGATCCACATACTCCAGAAATCAAGACTAGTTTGAGAAGAAATAT...

Protein

Download Protein FASTA

340 aa · TkA06G474000|TK1151|PROTEIN

MKSSVSARKIGANLWEVQPQFNFNKNDGDHGGDHEGDDGVDRVSLIHHHRRRHHQKEEFDVSGQLHEQPYDSDPHTPEIKTSLRRNIRKLPSLRHLSIEKNEDLQHVSSASCCSSMQVTPYACAITPTSYTLKTSTHLLKVLNRIWNLEEQHSSNVASIQALKHELDISRAQIKTLIEERKNDHKEISELKKSTHEKKKKAVQSTKDEVSDAKSSLMRERKARILLESLCDEFAKGIRDYEEKVRSLQQNRGRKDVTEPD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G474000
TK1151 IDTkA06G474000
OH-1004 IDLXL04_022599
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 93.235 / OH-1004 84.759
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G474000
LocationChr06:117244793-117248795 (+)
DescriptionSimilar to At5g41620: Uncharacterized protein At5g41620
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g41620 Uncharacterized protein At5g41620. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022599 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT5G41620
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.500
Rank 1 · TkA06G474000 · TK1151
Nucleus0.352
Rank 2 · TkA06G474000 · TK1151
Cell membrane0.312
Rank 3 · TkA06G474000 · TK1151
Endoplasmic reticulum0.040
Rank 4 · TkA06G474000 · TK1151
Golgi apparatus0.030
Rank 5 · TkA06G474000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07200Mod_r80-106 aa
PF28231STB2_C128-249 aa
PF07200Mod_r134-250 aa
PF25014NET2A142-219 aa
PF24161CCDC39144-249 aa
PF22905Hydro_N_hd147-214 aa
PF07926TPR_MLP1_2151-205 aa
PF16678UBA_HOIP153-253 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G474000PF07200Mod_r801065.47.7
TkA06G474000PF28231STB2_C1282490.1313.5
TkA06G474000PF07200Mod_r1342505.47.7
TkA06G474000PF25014NET2A1422190.3911.3
TkA06G474000PF24161CCDC391442490.00316.2
TkA06G474000PF22905Hydro_N_hd1472140.02715.1
TkA06G474000PF07926TPR_MLP1_21512050.1912.5
TkA06G474000PF16678UBA_HOIP1532530.04914.3
TkA06G474000PF12325TMF_TATA_bd1572120.6610.8
TkA06G474000PF12325TMF_TATA_bd1892490.6610.8
TkA06G474000PF07926TPR_MLP1_22362490.1912.5
TkA06G474000PF25014NET2A2363060.3911.3
TkA06G474000PF07200Mod_r2932985.47.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q66GQ2Arabidopsis thalianasp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g4162039.400%Swiss-ProtMedium

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