TkA06G457830 | RubberDandelionOmics

Gene overview

TkA06G457830

Reference: TK1151 Chr: Chr06 Coordinates: 113223343-113225000 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1045 bp · TkA06G457830|TK1151|cDNA

TTTACAAAACCACGAGGGGGTAAAGTGAAACTCTAACCTTTAAATCTTTTCGCCACACGCAGTTTAGGTCCAGAAGAGTCTTCTTCTACTCAAGCACCACAGCCATCCAACAACAGCTTGACGAACGACGAACCACCCAACGAAATACACGATTCACTCAAAGGAAGCTAACGATTAAGCATCCGAATCCACGGGCCTAAATGTCAGTTACGCTCCACACTAATCTCGGCGACATCAAGTGCGAAATCGCTTGTGATGAA...

CDS

Download CDS FASTA

483 bp · TkA06G457830|TK1151|CDS

ATGTCAGTTACGCTCCACACTAATCTCGGCGACATCAAGTGCGAAATCGCTTGTGATGAAGTGCCTAAAGCATCAGAGAATTTTCTTGCATTATGTGCAAGTGGATACTACGATGGCACAATTTTCCACAGAAACATAAGGGGATTTATGATCCAAGGTGGAGATCCCACAGGAACCGGCAAAGGAGGGACAAGTATTTGGGGCAAAAAGTTCAATGACGAGATACGTGAGTCTCTCAAGCATAATGCAAGAGGTATGCT...

Protein

Download Protein FASTA

160 aa · TkA06G457830|TK1151|PROTEIN

MSVTLHTNLGDIKCEIACDEVPKASENFLALCASGYYDGTIFHRNIRGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGMLSMANSGPNTNGSQFFITFAKQPHLNGLYTIFGKVIHGFEVLDLMEKTPTGAGDRPLAEIRINRITIHANPLAG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G457830`
TK1151 ID	TkA06G457830
OH-1004 ID	LXL04_024401
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	54.800
Protein coverage (%)	TK1151 96.875 / OH-1004 26.182 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G457830

Location Chr06:113223343-113225000 (-)

Description Similar to CYP65: Peptidyl-prolyl cis-trans isomerase CYP65

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g01940`	PPIases accelerate the folding of proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024401 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000209 protein polyubiquitination Biological Process

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0006397 mRNA processing Biological Process

GO:0006457 protein folding Biological Process

GO:0008380 RNA splicing Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0072659 protein localization to plasma membrane Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005681 spliceosomal complex Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005796 Golgi lumen Cellular Component

KEGG gene cross-reference

ani:ANIA_06894

ath:AT5G67530

hsa:23759

mmu:66053

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.654

Rank 1 · TkA06G457830 · TK1151

Nucleus0.401

Rank 2 · TkA06G457830 · TK1151

Mitochondrion0.149

Rank 3 · TkA06G457830 · TK1151

Cell membrane0.070

Rank 4 · TkA06G457830 · TK1151

Peroxisome0.049

Rank 5 · TkA06G457830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00160Pro_isomerase3-152 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G457830	`PF00160`	Pro_isomerase	3	152	2.9e-54	184.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LPC7`	Arabidopsis thaliana	sp\|Q9LPC7\|CP18A_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-1	92.500%	Swiss-Prot	High

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