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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G446280
Reference: TK1151 Chr: Chr06 Coordinates: 110255125-110264642 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1862 bp · TkA06G446280|TK1151|cDNA

GAAAAATTACCGGTCTGTATAAAGCATTCACCAACTTTACGTTTTACTGATTCACACCTATATCACTCTCTCTCTTCTTTCTCTCTCTTCCATGCAAAAGCTGAAGCAAAAGCCAAAGCTCAATCCCATCATCATCATTGTGCCAATAGAGCCATCCCTGACACATATCATGATTGCACATATCACCACCCTAATTCTCTCTCTCATCCTATAGATATATCTTTGTATGTATATATATATGTGTAGACATATAGGTGGTG...

CDS

Download CDS FASTA

1020 bp · TkA06G446280|TK1151|CDS

ATGGGCGAGAAGGATGATGGTCTGGGGTTGAGTTTGGGTTTGAAATGCTCGGAAGATTATCCACCCCCGCCGCTGCCGCTGCCGGTTGTTGCTGGTTCGAACGCTGCGACGCGTTTTCCGTTGAATCTGTTGACATCTCCCCCTTTGTCATTTGTTCAACGGCATCATGTTCCGAATCATCAAAAGCTTTCGTTCATGATCAATCACGCTGCGCCTCCTCCCTCCGTTCCTCCGCCTGATTTAAATGCCGAAACCAGATC...

Protein

Download Protein FASTA

339 aa · TkA06G446280|TK1151|PROTEIN

MGEKDDGLGLSLGLKCSEDYPPPPLPLPVVAGSNAATRFPLNLLTSPPLSFVQRHHVPNHQKLSFMINHAAPPPSVPPPDLNAETRSYSRGIDVNRLPSTSAVAPLTTERDDEALVSSPNSTLSSVSGKRVEREENEAERESSSHGISGDEDDEGGEASAARKKLRLSKDQAAVLEETFKEHNTLNPKQKLALAKQLDLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTDENRRLQKEVNELRALKLSPQFYMN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G446280
TK1151 IDTkA06G446280
OH-1004 IDLXL04_022786
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G446280
LocationChr06:110255125-110264642 (-)
DescriptionSimilar to HAT3: Homeobox-leucine zipper protein HAT3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g60390 Probable transcription factor. No verified direct reference in this release
At4g16780 Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system.
Negative autoregulation of the Arabidopsis homeobox gene ATHB-2.2001 · DOI: 10.1046/j.1365-313x.2001.00966.x
The HAT4 gene of Arabidopsis encodes a developmental regulator.1993 · DOI: 10.1101/gad.7.3.367
At2g44910 Probable transcription factor. No verified direct reference in this release
At4g17460 Probable transcription factor. No verified direct reference in this release
At5g47370 Probable transcription factor that plays a role in auxin-mediated morphogenesis.
The HAT2 gene, a member of the HD-Zip gene family, isolated as an auxin inducible gene by DNA microarray screening, affects auxin response in Arabidopsis.2002 · DOI: 10.1046/j.1365-313x.2002.01488.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022786 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0003006 developmental process involved in reproduction Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009585 red, far-red light phototransduction Biological Process
GO:0009641 shade avoidance Biological Process
GO:0009725 response to hormone Biological Process
GO:0009733 response to auxin Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009735 response to cytokinin Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0010016 shoot system morphogenesis Biological Process
GO:0010017 red or far-red light signaling pathway Biological Process
KEGG gene cross-reference
ath:AT2G44910
ath:AT3G60390
ath:AT4G16780
ath:AT4G17460
ath:AT5G47370
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.984
Rank 1 · TkA06G446280 · TK1151
Cytoplasm0.066
Rank 2 · TkA06G446280 · TK1151
Cell membrane0.022
Rank 3 · TkA06G446280 · TK1151
Endoplasmic reticulum0.014
Rank 4 · TkA06G446280 · TK1151
Plastid0.009
Rank 5 · TkA06G446280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04618HD-ZIP_N1-134 aa
PF08961NRBF2107-200 aa
PF11718CPSF73-100_C131-225 aa
PF25966Myo5a135-171 aa
PF00046Homeodomain162-216 aa
PF05920Homeobox_KN187-214 aa
PF02183HALZ188-197 aa
PF25966Myo5a189-250 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G446280PF04618HD-ZIP_N11344.2e-2279.4
TkA06G446280PF08961NRBF21072001.19.5
TkA06G446280PF11718CPSF73-100_C1312250.2311.7
TkA06G446280PF25966Myo5a1351710.8210.4
TkA06G446280PF00046Homeodomain1622161.1e-1557.8
TkA06G446280PF05920Homeobox_KN1872140.0005720.4
TkA06G446280PF02183HALZ1881972.5e-1144.2
TkA06G446280PF25966Myo5a1892500.8210.4
TkA06G446280PF08961NRBF22112511.19.5
TkA06G446280PF24292DUF74792152290.01516.1
TkA06G446280PF02183HALZ2182522.5e-1144.2
TkA06G446280PF24292DUF74792582800.01516.1
TkA06G446280PF04618HD-ZIP_N2802934.2e-2279.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P46602Arabidopsis thalianasp|P46602|HAT3_ARATH Homeobox-leucine zipper protein HAT355.600%Swiss-ProtHigh
Q05466Arabidopsis thalianasp|Q05466|HAT4_ARATH Homeobox-leucine zipper protein HAT452.900%Swiss-ProtHigh
P92953Arabidopsis thalianasp|P92953|ATHB4_ARATH Homeobox-leucine zipper protein ATHB-461.600%Swiss-ProtMedium
P46600Arabidopsis thalianasp|P46600|HAT1_ARATH Homeobox-leucine zipper protein HAT152.500%Swiss-ProtHigh
P46601Arabidopsis thalianasp|P46601|HAT2_ARATH Homeobox-leucine zipper protein HAT251.200%Swiss-ProtHigh

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