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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G441070
Reference: TK1151 Chr: Chr06 Coordinates: 108976347-108989731 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3189 bp · TkA06G441070|TK1151|cDNA

ATTTCTGTCATGTTCAGGCTTTTAACACTGTTTAGACTCTATTTCTGTCATCTTTATTAAACAAGATCATCCCCTCCCAGCCTCTATCGCTGTCGCTGACGTTCTTTTCGGTTCTCTCTCGTTTGCCTTCTTCAGAAAATCATAAATCACCCCCACATCGCCGCCCCTAAAACCTCTTCTCACCGGAACCTTCATTGGGGAATCATAAACCACCGCCGTCGGAAAAACACCTCCCCGTCGGAGATACCAAAACCCAGCTT...

CDS

Download CDS FASTA

1608 bp · TkA06G441070|TK1151|CDS

ATGGCATTGCGTTTTATGCAATCTCGCAGTATGTTCAGCTTGCTCCATTTCCGCTCAATATCTTCATTCTCTTCTTCAACCTCTGAACCCAAAGAATTTATATCCGAAAGTGTGTCAAAACCTTTACTTCTTTCACTTGAACCATCAAACGATGCCGATTTAATTTCCCAGATGCTTATCCAACACCATAACCCATTCCACACAATGGAATCCTCTCTGCAACTCAACGGAATCAAAATCTCCCCAAATCTCGTCCACCA...

Protein

Download Protein FASTA

535 aa · TkA06G441070|TK1151|PROTEIN

MALRFMQSRSMFSLLHFRSISSFSSSTSEPKEFISESVSKPLLLSLEPSNDADLISQMLIQHHNPFHTMESSLQLNGIKISPNLVHQTLLRLKNISKVALAFFSWAKEQSHYSHDSHSYNLMIDILGKVRQFDVAWQLIIEMDQNGVNPTSTTFYVLIRRLISAGLTRQAIRAFDDMGCFVVNDSDLQHQQEQQQPVHDFYFLFDTLCKYGYPKVAAEMFNKWKSWRFEPDAKIYTILIYGWCKINKPKMAERFFQEMVN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G441070
TK1151 IDTkA06G441070
OH-1004 IDLXL04_022839
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.100
Protein coverage (%)TK1151 98.131 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G441070
LocationChr06:108976347-108989731 (-)
DescriptionSimilar to At2g13420: Pentatricopeptide repeat-containing protein At2g13420, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g13420 Pentatricopeptide repeat-containing protein At2g13420, mitochondrial. No verified direct reference in this release
At1g20300 Pentatricopeptide repeat-containing protein At1g20300, mitochondrial. No verified direct reference in this release
At3g22670 Pentatricopeptide repeat-containing protein At3g22670, mitochondrial. No verified direct reference in this release
At5g14820 Pentatricopeptide repeat-containing protein At5g14820, mitochondrial. No verified direct reference in this release
At3g62470 Pentatricopeptide repeat-containing protein At3g62470, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022839 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G20300
ath:AT1G52640
ath:AT1G71060
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.765
Rank 1 · TkA06G441070 · TK1151
Plastid0.130
Rank 2 · TkA06G441070 · TK1151
Nucleus0.064
Rank 3 · TkA06G441070 · TK1151
Cytoplasm0.032
Rank 4 · TkA06G441070 · TK1151
Cell membrane0.010
Rank 5 · TkA06G441070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08579RPM261-89 aa
PF29070MSC6_N66-168 aa
PF23860Ribophorin_II_3rd83-133 aa
PF19189Mtf296-157 aa
PF23276TPR_24111-163 aa
PF13041PPR_2115-161 aa
PF12854PPR_1115-142 aa
PF17177PPR_long116-179 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G441070PF08579RPM261890.003218.6
TkA06G441070PF29070MSC6_N661684.8e-1969.4
TkA06G441070PF23860Ribophorin_II_3rd831330.2312.2
TkA06G441070PF19189Mtf2961572.3e-0731.4
TkA06G441070PF23276TPR_241111635.1e-1969.2
TkA06G441070PF13041PPR_21151613.4e-73242.3
TkA06G441070PF12854PPR_11151425.8e-44148.2
TkA06G441070PF17177PPR_long1161798.5e-2278.3
TkA06G441070PF01535PPR1181477e-45148.9
TkA06G441070PF13812PPR_31181582.1e-37127.7
TkA06G441070PF08579RPM21321640.003218.6
TkA06G441070PF12854PPR_11451775.8e-44148.2
TkA06G441070PF01535PPR1531777e-45148.9
TkA06G441070PF13041PPR_21571773.4e-73242.3
TkA06G441070PF13041PPR_22032443.4e-73242.3
TkA06G441070PF01535PPR2052267e-45148.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WP85Arabidopsis thalianasp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial48.800%Swiss-ProtMedium
Q9LN22Arabidopsis thalianasp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial35.400%Swiss-ProtLow
Q9LUJ4Arabidopsis thalianasp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial30.200%Swiss-ProtLow
Q9LEQ7Arabidopsis thalianasp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial30.500%Swiss-ProtLow
Q9LZP3Arabidopsis thalianasp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial30.500%Swiss-ProtLow

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