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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G438410
Reference: TK1151 Chr: Chr06 Coordinates: 108368169-108368792 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

624 bp · TkA06G438410|TK1151|cDNA

ATGGTTGGAAAAAGTAAAAACATTAATGCAAAGGTGGAAAACTTTCCAAGTGAAGTTGGGAGCTGTTTCAATATCATGGACAGACACAAGCTTGGAAGGAAAGCGTTCCAGATACTTGAGGAGATAGAAAGTGTCACGACACAACACTCTCTCATCACCTGGAGTGATCGTCCAATTCCGTTGGGAAGAGTTGATTCTACCAGGACATCCGTCTCTGCACCATTAACAACTAATCATCATGAGGACTTTCAATCAAGAAA...

CDS

Download CDS FASTA

624 bp · TkA06G438410|TK1151|CDS

ATGGTTGGAAAAAGTAAAAACATTAATGCAAAGGTGGAAAACTTTCCAAGTGAAGTTGGGAGCTGTTTCAATATCATGGACAGACACAAGCTTGGAAGGAAAGCGTTCCAGATACTTGAGGAGATAGAAAGTGTCACGACACAACACTCTCTCATCACCTGGAGTGATCGTCCAATTCCGTTGGGAAGAGTTGATTCTACCAGGACATCCGTCTCTGCACCATTAACAACTAATCATCATGAGGACTTTCAATCAAGAAA...

Protein

Download Protein FASTA

207 aa · TkA06G438410|TK1151|PROTEIN

MVGKSKNINAKVENFPSEVGSCFNIMDRHKLGRKAFQILEEIESVTTQHSLITWSDRPIPLGRVDSTRTSVSAPLTTNHHEDFQSRNQTFLEALKAFQPNHKSHMIALCGMGGVGKTTMMEKLKKVAEKKKTFNYIVEVVIGENTDPIAAIQDVVATYIGIELKEKDKRARANKLCQGFKAKSDGGKNKFFIILDDIWHFVDLEDIV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G438410
TK1151 IDTkA06G438410
OH-1004 IDLXL04_014925
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.000
Protein coverage (%)TK1151 98.068 / OH-1004 16.175
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G438410
LocationChr06:108368169-108368792 (+)
DescriptionSimilar to RPS2: Disease resistance protein RPS2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g12280 Disease resistance protein that mediates defense responses against the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000, and the virulent oomycete Hyaloperonospora arabidopsidis isolate Noco2.
The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.2012 · DOI: 10.1105/tpc.112.097253

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014925 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0006952 defense response Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0016045 detection of bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0098542 defense response to other organism Biological Process
GO:2000377 regulation of reactive oxygen species metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G12280
ath:AT1G61180
ath:AT4G26090
ath:AT4G27190
ath:AT4G27220
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.783
Rank 1 · TkA06G438410 · TK1151
Endoplasmic reticulum0.118
Rank 2 · TkA06G438410 · TK1151
Cytoplasm0.115
Rank 3 · TkA06G438410 · TK1151
Extracellular0.059
Rank 4 · TkA06G438410 · TK1151
Nucleus0.058
Rank 5 · TkA06G438410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13401AAA_223-27 aa
PF13245AAA_193-58 aa
PF13173AAA_1426-44 aa
PF08433KTI1264-90 aa
PF03308MeaB77-125 aa
PF14639YqgF81-132 aa
PF00549Ligase_CoA88-147 aa
PF12847Methyltransf_1890-132 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G438410PF13401AAA_223270.0004521.3
TkA06G438410PF13245AAA_193580.0215.8
TkA06G438410PF13173AAA_1426440.002318.6
TkA06G438410PF08433KTI1264900.1112.6
TkA06G438410PF03308MeaB771250.02514.3
TkA06G438410PF14639YqgF811320.09513.2
TkA06G438410PF00549Ligase_CoA881470.08613.7
TkA06G438410PF12847Methyltransf_18901320.01915.7
TkA06G438410PF20693YobI-ATPase911330.0713.4
TkA06G438410PF05621TniB911310.1812.0
TkA06G438410PF03193RsgA_GTPase921300.0009819.7
TkA06G438410PF07693KAP_NTPase921920.00218.1
TkA06G438410PF00006ATP-synt_ab941510.07613.4
TkA06G438410PF03215Rad17941290.1312.9
TkA06G438410PF00503G-alpha951760.05113.4
TkA06G438410PF13245AAA_19961360.0215.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P60838Arabidopsis thalianasp|P60838|SUMM2_ARATH Disease resistance protein SUMM227.500%Swiss-ProtLow

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