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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G428000
Reference: TK1151 Chr: Chr06 Coordinates: 105888674-105889951 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1278 bp · TkA06G428000|TK1151|cDNA

ATGGAGTTCTTCTGCAACTCCTTTCTGCAACTACTTGCACTCTTTCTTACACTTCTCCTCACAATTTCTCCTACAACCCAACAACAACTAGCCGCCGTCGATCTCAATGCGCTCCATCAGATCATGGACACACTCACCGACGTCAAAAATGGCGGATTCTTCTCAACTTGGAACTTCTCCTCATCGGAAAATCCGTGTTCTTCGTTTGCCGGCGTCACTTGCTCTGTAATCAACGGTGAGTTACGAGTCACGGCTCTCTT...

CDS

Download CDS FASTA

1278 bp · TkA06G428000|TK1151|CDS

ATGGAGTTCTTCTGCAACTCCTTTCTGCAACTACTTGCACTCTTTCTTACACTTCTCCTCACAATTTCTCCTACAACCCAACAACAACTAGCCGCCGTCGATCTCAATGCGCTCCATCAGATCATGGACACACTCACCGACGTCAAAAATGGCGGATTCTTCTCAACTTGGAACTTCTCCTCATCGGAAAATCCGTGTTCTTCGTTTGCCGGCGTCACTTGCTCTGTAATCAACGGTGAGTTACGAGTCACGGCTCTCTT...

Protein

Download Protein FASTA

425 aa · TkA06G428000|TK1151|PROTEIN

MEFFCNSFLQLLALFLTLLLTISPTTQQQLAAVDLNALHQIMDTLTDVKNGGFFSTWNFSSSENPCSSFAGVTCSVINGELRVTALLLGTGMSDSPGLAGTISAVGIYDLTELTQLILYPGIVTGFIPSQLGRRLINLRVISLTDNRLTGTIPQTISELQNLHTLDLSHNKLTGVIPPTLASALPELKVLVLAYNNLDGEIPEFTDESTLIHLDLRNNLLSGNLPDTLPATLRYLSLSSNGLWGPLNSVPSSNLVYLDLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G428000
TK1151 IDTkA06G428000
OH-1004 IDLXL04_022917
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G428000
LocationChr06:105888674-105889951 (-)
DescriptionSimilar to DRT100: DNA damage-repair/toleration protein DRT100
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022917 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0007165 signal transduction Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0000166 nucleotide binding Molecular Function
GO:0004672 protein kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT3G12610
ath:AT3G51740
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.471
Rank 1 · TkA06G428000 · TK1151
Extracellular0.189
Rank 2 · TkA06G428000 · TK1151
Endoplasmic reticulum0.129
Rank 3 · TkA06G428000 · TK1151
Cytoplasm0.092
Rank 4 · TkA06G428000 · TK1151
Nucleus0.058
Rank 5 · TkA06G428000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855LRR_89-32 aa
PF08263LRRNT_234-75 aa
PF13855LRR_8101-118 aa
PF12799LRR_4107-118 aa
PF14580LRR_9131-198 aa
PF23598LRR_14134-193 aa
PF00560LRR_1137-159 aa
PF12799LRR_4137-151 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G428000PF13855LRR_89325.6e-1658.8
TkA06G428000PF08263LRRNT_234752.2e-0731.8
TkA06G428000PF13855LRR_81011185.6e-1658.8
TkA06G428000PF12799LRR_41071187.8e-1761.6
TkA06G428000PF14580LRR_91311980.002618.1
TkA06G428000PF23598LRR_141341930.0001321.6
TkA06G428000PF00560LRR_11371592.9e-2892.5
TkA06G428000PF12799LRR_41371517.8e-1761.6
TkA06G428000PF12799LRR_41371737.8e-1761.6
TkA06G428000PF13855LRR_81371975.6e-1658.8
TkA06G428000PF13516LRR_61371500.0005720.4
TkA06G428000PF24141LRR_ComC1422272.1e-0628.4
TkA06G428000PF25013LRR_Zer-11552140.212.5
TkA06G428000PF12799LRR_41602017.8e-1761.6
TkA06G428000PF13516LRR_61601740.0005720.4
TkA06G428000PF00560LRR_11611812.9e-2892.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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