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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G415980
Reference: TK1151 Chr: Chr06 Coordinates: 102948144-102962509 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3775 bp · TkA06G415980|TK1151|cDNA

ATAGTAAGTCGAAACCCAAGTCCCAAATAAGTATGTGCCCTCGTCTATGCTAAAAATGAAAACCCTCTTCCACACCCCCTGAGTCCTGAACCCTCGCATCACCTGAAAAACCAACGCTCTTCGAAGATTAATTCTCAATTCCGTGCTTAACAGATTCATCATCTCTAGTATGAGTTAATCAATCAACAAAATTTGGTTGAATTGAACCAATAATATGGTTTCGAAGCAATCTGGCAAGGAAAATGAGGATGCTGGTGCCG...

CDS

Download CDS FASTA

3492 bp · TkA06G415980|TK1151|CDS

ATGGTTTCGAAGCAATCTGGCAAGGAAAATGAGGATGCTGGTGCCGAAGCTGATGTTGATGCTGGCGTGGTTTCTTCTCCCAGGCCAGTTCGCACAAGTGATAGGCTTCGAAAAAGGCCTAAATCGTACAATCGGTATGTAATGTATCCGAAGTCGAAACGAAGCAAGAAGAAAACGAGAACCGCTGCTTCTCAGATTGCCAAGATGTTAAACACCAGAAAGAAAAACTCGGATTCTGTTCTTGCAACCCTACGTCGTTC...

Protein

Download Protein FASTA

1163 aa · TkA06G415980|TK1151|PROTEIN

MVSKQSGKENEDAGAEADVDAGVVSSPRPVRTSDRLRKRPKSYNRYVMYPKSKRSKKKTRTAASQIAKMLNTRKKNSDSVLATLRRSTRQRRVSVNLDAYTDSTGTEDNDLMGPKYRSSRSRNNSSNRHKEKLPRREGLRPRHSNSGPIGQLLLESEDDERETYQENNNDQNGHENDMEEDNNNDGEEDGDDEDEDEDEEEDNEEEQEGRRRYDLRNRSEVRRLEEGKQRPRSPRRVLQQGVKMSKHSRSSRVHKRHRIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G415980
TK1151 IDTkA06G415980
OH-1004 IDLXL04_016561
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)51.400
Protein coverage (%)TK1151 23.044 / OH-1004 16.546
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G415980
LocationChr06:102948144-102962509 (+)
DescriptionSimilar to Atad2: ATPase family AAA domain-containing protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g05910 ATPase family AAA domain-containing protein At1g05910. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016561 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006261 DNA-templated DNA replication Biological Process
GO:0006325 chromatin organization Biological Process
GO:0006334 nucleosome assembly Biological Process
GO:0006337 nucleosome disassembly Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0034080 CENP-A containing chromatin assembly Biological Process
GO:0045815 transcription initiation-coupled chromatin remodeling Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0000775 chromosome, centromeric region Cellular Component
GO:0000785 chromatin Cellular Component
KEGG gene cross-reference
hsa:29028
mmu:70472
pon:100174282
sce:YGR270W
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.891
Rank 1 · TkA06G415980 · TK1151
Cytoplasm0.205
Rank 2 · TkA06G415980 · TK1151
Mitochondrion0.023
Rank 3 · TkA06G415980 · TK1151
Cell membrane0.022
Rank 4 · TkA06G415980 · TK1151
Endoplasmic reticulum0.012
Rank 5 · TkA06G415980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05764YL19-105 aa
PF01057Parvo_NS144-80 aa
PF24883NPHP3_N46-87 aa
PF20720nSTAND358-87 aa
PF13245AAA_1958-105 aa
PF05764YL1141-267 aa
PF13191AAA_16148-189 aa
PF04931DNA_pol_phi157-209 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G415980PF05764YL191050.006717.3
TkA06G415980PF01057Parvo_NS144800.03613.8
TkA06G415980PF24883NPHP3_N46870.02515.5
TkA06G415980PF20720nSTAND358871.8e-0525.2
TkA06G415980PF13245AAA_19581050.1113.3
TkA06G415980PF05764YL11412670.006717.3
TkA06G415980PF13191AAA_161481890.00219.4
TkA06G415980PF04931DNA_pol_phi1572093.86.3
TkA06G415980PF13401AAA_222312770.01616.2
TkA06G415980PF00004AAA2562802.7e-43148.3
TkA06G415980PF12775AAA_73784110.04114.1
TkA06G415980PF00005ABC_tran3844690.07314.4
TkA06G415980PF00270DEAD3864120.212.1
TkA06G415980PF13191AAA_163874910.00219.4
TkA06G415980PF25199nSTAND_NTPase53874620.002918.2
TkA06G415980PF06068TIP493884370.00317.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IAE9Arabidopsis thalianasp|F4IAE9|Y1591_ARATH ATPase family AAA domain-containing protein At1g0591062.400%Swiss-ProtHigh

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