Gene Card
Gene overview
cDNA / CDS / Protein Sequences
870 bp · TkA06G398310|TK1151|cDNA
ATGCTTCGCACTGACATTCGGGAGTTCGTGGTTGCTTACCCACGAACTTCACTGGCCGAGTTGATGGATGCTGCCAGGCGACGGGAGATGGAGGTTGAGATGCAAGTTCAGAAACGGAAGGCGACGCAGGCACTGGTACCTGCATCATCGGAGTCCAAGAAGACGAAAACCTTCGATAGCCGCTCTGGGTCTAATAGCGGAGGCCGGGGACCACCTGCTGGGGCGGAAGGGACGGGGCCGACCGTGTGCTTCAAGTGTGG...
870 bp · TkA06G398310|TK1151|CDS
ATGCTTCGCACTGACATTCGGGAGTTCGTGGTTGCTTACCCACGAACTTCACTGGCCGAGTTGATGGATGCTGCCAGGCGACGGGAGATGGAGGTTGAGATGCAAGTTCAGAAACGGAAGGCGACGCAGGCACTGGTACCTGCATCATCGGAGTCCAAGAAGACGAAAACCTTCGATAGCCGCTCTGGGTCTAATAGCGGAGGCCGGGGACCACCTGCTGGGGCGGAAGGGACGGGGCCGACCGTGTGCTTCAAGTGTGG...
Protein
Download Protein FASTA289 aa · TkA06G398310|TK1151|PROTEIN
MLRTDIREFVVAYPRTSLAELMDAARRREMEVEMQVQKRKATQALVPASSESKKTKTFDSRSGSNSGGRGPPAGAEGTGPTVCFKCGKPGHTGRDCRSSMIACFRCSQVGHCRSECPQLHVAGRGATPNAPAAATPMQITDGRTGPTRPPPFGQSRVYQLTADEAPTSPSIMEGNPIAPYPSSSPPSDLRQTVLVHRRISCRGFILLVATAGKPHAGSSSYLFPTTSKAHSFPPSKQPHLHLIQPSAASSSSGDLVHPVA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G398310 |
|---|---|
| TK1151 ID | TkA06G398310 |
| OH-1004 ID | LXL04_023626 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 86.300 |
| Protein coverage (%) | TK1151 64.360 / OH-1004 25.033Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G398310 |
|---|---|
| Location | Chr06:98677397-98679784 (-) |
| Description | Similar to gag-pol: Gag-Pol polyprotein (Simian immunodeficiency virus agm.grivet (isolate AGM gr-1) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0039657 symbiont-mediated suppression of host gene expression Biological Process GO:0039702 viral budding via host ESCRT complex Biological Process GO:0044826 viral genome integration into host DNA Biological Process GO:0046718 symbiont entry into host cell Biological Process GO:0075523 viral translational frameshifting Biological Process GO:0075713 establishment of integrated proviral latency Biological Process GO:0075732 viral penetration into host nucleus Biological Process GO:0019013 viral nucleocapsid Cellular Component GO:0020002 host cell plasma membrane Cellular Component |
| KEGG gene cross-reference | No functional description available |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14787zf-CCHC_581-98 aaPF14392zf-CCHC_481-97 aaPF27939DUF836381-120 aaPF13917zf-CCHC_381-97 aaPF00098zf-CCHC82-97 aaPF13696zf-CCHC_282-96 aaPF01753zf-MYND83-120 aaPF16588zf-C2H2_1086-92 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G398310 | PF14787 | zf-CCHC_5 | 81 | 98 | 0.072 | 13.5 |
| TkA06G398310 | PF14392 | zf-CCHC_4 | 81 | 97 | 0.19 | 12.1 |
| TkA06G398310 | PF27939 | DUF8363 | 81 | 120 | 0.3 | 11.7 |
| TkA06G398310 | PF13917 | zf-CCHC_3 | 81 | 97 | 2.7 | 8.6 |
| TkA06G398310 | PF00098 | zf-CCHC | 82 | 97 | 3.9e-09 | 36.9 |
| TkA06G398310 | PF13696 | zf-CCHC_2 | 82 | 96 | 0.18 | 12.3 |
| TkA06G398310 | PF01753 | zf-MYND | 83 | 120 | 0.21 | 12.4 |
| TkA06G398310 | PF16588 | zf-C2H2_10 | 86 | 92 | 3.9 | 8.0 |
| TkA06G398310 | PF14392 | zf-CCHC_4 | 101 | 117 | 0.19 | 12.1 |
| TkA06G398310 | PF13917 | zf-CCHC_3 | 101 | 117 | 2.7 | 8.6 |
| TkA06G398310 | PF16588 | zf-C2H2_10 | 101 | 117 | 3.9 | 8.0 |
| TkA06G398310 | PF00098 | zf-CCHC | 102 | 118 | 3.9e-09 | 36.9 |
| TkA06G398310 | PF14787 | zf-CCHC_5 | 103 | 116 | 0.072 | 13.5 |
| TkA06G398310 | PF13696 | zf-CCHC_2 | 103 | 118 | 0.18 | 12.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.