TkA06G373180 | RubberDandelionOmics

Gene overview

TkA06G373180

Reference: TK1151 Chr: Chr06 Coordinates: 92415295-92416894 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

531 bp · TkA06G373180|TK1151|cDNA

TCCTCGTCGCAATTATCGGCTACTCGTTTAGTCATTCCGAAAGCTGCTAGTCAGAGTCAAAATCCGAGGAAGAGAACTCCCAAGGAACATACTCACAAGTCGTCACCTGAGAAAGAAGGTAATTCTCAAACAAATTCAAGATCAAGAGATGAAAGAAAATATCTAGATGCTGATGATCGCAGTGGTATTAAAAGAACAGAACAACCTCAATCAACAGCTTTCAAGTCGTTTGGCACACAGAGAAAAAGTGCTAAAGGTTT...

CDS

Download CDS FASTA

531 bp · TkA06G373180|TK1151|CDS

TCCTCGTCGCAATTATCGGCTACTCGTTTAGTCATTCCGAAAGCTGCTAGTCAGAGTCAAAATCCGAGGAAGAGAACTCCCAAGGAACATACTCACAAGTCGTCACCTGAGAAAGAAGGTAATTCTCAAACAAATTCAAGATCAAGAGATGAAAGAAAATATCTAGATGCTGATGATCGCAGTGGTATTAAAAGAACAGAACAACCTCAATCAACAGCTTTCAAGTCGTTTGGCACACAGAGAAAAAGTGCTAAAGGTTT...

Protein

Download Protein FASTA

177 aa · TkA06G373180|TK1151|PROTEIN

SSSQLSATRLVIPKAASQSQNPRKRTPKEHTHKSSPEKEGNSQTNSRSRDERKYLDADDRSGIKRTEQPQSTAFKSFGTQRKSAKGFMGNLTEQQLETAKIQDASFLNAVVKVYCTHTAPDYSLPWQKQRQFTSTGSAFMIGDGKLLTNAHYVEHNTQVKVKRRGDDTKYVAKVLAK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G373180`
TK1151 ID	TkA06G373180
OH-1004 ID	LXL04_001110
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	94.600
Protein coverage (%)	TK1151 100.000 / OH-1004 28.395 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G373180

Location Chr06:92415295-92416894 (+)

Description Similar to DEGP2: Protease Do-like 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47940`	Serine protease that performs the primary cleavage of the photodamaged D1 protein in plant photosystem II.	A chloroplast DegP2 protease performs the primary cleavage of the photodamaged D1 protein in plant photosystem II.2001 · DOI: 10.1093/emboj/20.4.713
`At5g40200`	Serine protease that degrades the two-component response regulator ARR4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001110 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0010206 photosystem II repair Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009533 chloroplast stromal thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT1G65630

ath:AT1G65640

ath:AT2G47940

ath:AT5G36950

ath:AT5G40200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.426

Rank 1 · TkA06G373180 · TK1151

Nucleus0.337

Rank 2 · TkA06G373180 · TK1151

Mitochondrion0.201

Rank 3 · TkA06G373180 · TK1151

Endoplasmic reticulum0.093

Rank 4 · TkA06G373180 · TK1151

Cell membrane0.076

Rank 5 · TkA06G373180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00089Trypsin115-163 aa

PF13365Trypsin_2136-176 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G373180	`PF00089`	Trypsin	115	163	6.2e-05	23.6
TkA06G373180	`PF13365`	Trypsin_2	136	176	0.015	16.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O82261`	Arabidopsis thaliana	sp\|O82261\|DEGP2_ARATH Protease Do-like 2, chloroplastic	76.400%	Swiss-Prot	Medium
`Q9FL12`	Arabidopsis thaliana	sp\|Q9FL12\|DEGP9_ARATH Protease Do-like 9	62.900%	Swiss-Prot	Low

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