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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G283200
Reference: TK1151 Chr: Chr06 Coordinates: 71518437-71521071 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2227 bp · TkA06G283200|TK1151|cDNA

ACATAAGATATTTTTAAAAGTGGGATATTTTGGTGGATTTTGAGAAGTTGAATAAATATCTCACCTTCCATTAACCCTTGCATCTTTCCTTGCTGAGTTGCCATGGGGATGCCAATAGACGATGAAACAGAGGATGTTCAGAGGAGCAAGAGGCTTAAAAGCGGTACCGATGAAGACGAAGACTATTACTACGACGATATAGACGAGGAAGATAGTGGTGGTGGATTTTCGTTAAGGTTAGGCGAGTTTTTCAATCCGTT...

CDS

Download CDS FASTA

1887 bp · TkA06G283200|TK1151|CDS

ATGGGGATGCCAATAGACGATGAAACAGAGGATGTTCAGAGGAGCAAGAGGCTTAAAAGCGGTACCGATGAAGACGAAGACTATTACTACGACGATATAGACGAGGAAGATAGTGGTGGTGGATTTTCGTTAAGGTTAGGCGAGTTTTTCAATCCGTTGATTCCGTCTTCAATTGTGGTTTCGGATGCCATGGAACCGGAATTTCCTATAATTTACGTTAATAAGGTCTTTGAATCCACCACCGGTTATCGCGCTGATGA...

Protein

Download Protein FASTA

628 aa · TkA06G283200|TK1151|PROTEIN

MGMPIDDETEDVQRSKRLKSGTDEDEDYYYDDIDEEDSGGGFSLRLGEFFNPLIPSSIVVSDAMEPEFPIIYVNKVFESTTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVCVSEMRRCLEEGIDFQGELLNFRKDGTPLVNRLRLTPIHGDDGTVTHVIGIQVFTEAKLDLNTISYPVFKIQSDHHQLTTRLEESSSSPIRQTKETECGILQLSDEVMAQNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G283200
TK1151 IDTkA06G283200
OH-1004 IDLXL04_028378
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)65.300
Protein coverage (%)TK1151 90.605 / OH-1004 93.760
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G283200
LocationChr06:71518437-71521071 (-)
DescriptionSimilar to ADO1: Adagio protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g68050 Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles.
FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis.2000 · DOI: 10.1016/s0092-8674(00)80842-9
Functional conservation of light, oxygen, or voltage domains in light sensing.2003 · DOI: 10.1073/pnas.1031791100
FKF1 is essential for photoperiodic-specific light signalling in Arabidopsis.2003 · DOI: 10.1038/nature02090
FKF1 F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis.2005 · DOI: 10.1126/science.1110586
FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis.2007 · DOI: 10.1126/science.1146994
Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response.2009 · DOI: 10.1016/j.devcel.2009.06.015
LOV KELCH PROTEIN2 and ZEITLUPE repress Arabidopsis photoperiodic flowering under non-inductive conditions, dependent on FLAVIN-BINDING KELCH REPEAT F-BOX1.2011 · DOI: 10.1111/j.1365-313x.2011.04618.x
FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering.2012 · DOI: 10.1126/science.1219644
At5g57360 Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles.
LKP1 (LOV kelch protein 1): a factor involved in the regulation of flowering time in arabidopsis.2000 · DOI: 10.1046/j.1365-313x.2000.00850.x
An Arabidopsis circadian clock component interacts with both CRY1 and phyB.2001 · DOI: 10.1038/35068589
LOV KELCH PROTEIN2 and ZEITLUPE repress Arabidopsis photoperiodic flowering under non-inductive conditions, dependent on FLAVIN-BINDING KELCH REPEAT F-BOX1.2011 · DOI: 10.1111/j.1365-313x.2011.04618.x

Rice

Reference gene IDPossible functionPapers / DOI
Os11g0547000 Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles. No verified direct reference in this release
Os06g0694000 Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles. No verified direct reference in this release
Os02g0150800 Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028378 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0007623 circadian rhythm Biological Process
GO:0009637 response to blue light Biological Process
GO:0009908 flower development Biological Process
GO:0010114 response to red light Biological Process
GO:0010498 proteasomal protein catabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0042752 regulation of circadian rhythm Biological Process
GO:0043153 entrainment of circadian clock by photoperiod Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT2G18915
ath:AT5G57360
dosa:Os06g0694000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.391
Rank 1 · TkA06G283200 · TK1151
Nucleus0.330
Rank 2 · TkA06G283200 · TK1151
Plastid0.118
Rank 3 · TkA06G283200 · TK1151
Mitochondrion0.113
Rank 4 · TkA06G283200 · TK1151
Cell membrane0.112
Rank 5 · TkA06G283200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13188PAS_854-103 aa
PF13426PAS_965-165 aa
PF08448PAS_465-164 aa
PF08447PAS_370-164 aa
PF00989PAS70-164 aa
PF00989PAS218-249 aa
PF00646F-box218-253 aa
PF12937F-box-like223-259 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G283200PF13188PAS_8541030.03114.9
TkA06G283200PF13426PAS_9651655e-1762.8
TkA06G283200PF08448PAS_4651640.0003421.5
TkA06G283200PF08447PAS_3701642.4e-0731.6
TkA06G283200PF00989PAS701641.1e-0526.1
TkA06G283200PF00989PAS2182491.1e-0526.1
TkA06G283200PF00646F-box2182530.0001322.4
TkA06G283200PF12937F-box-like2232591.5e-0525.4
TkA06G283200PF24681Kelch_KLHDC2_KLHL20_DRC72884847e-56189.7
TkA06G283200PF13415Beta-prop_FBX422894492.9e-57194.3
TkA06G283200PF13854Kelch_HCF2893242.9e-1970.3
TkA06G283200PF24981Beta-prop_ATRN-LZTR12904325.4e-2485.7
TkA06G283200PF13418Beta-prop_TYW43065514.5e-1350.4
TkA06G283200PF07646Kelch_23073522e-2381.8
TkA06G283200PF01344Kelch_13073503.7e-1555.8
TkA06G283200PF13854Kelch_HCF3456052.9e-1970.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C9W9Arabidopsis thalianasp|Q9C9W9|ADO3_ARATH Adagio protein 375.500%Swiss-ProtHigh
Q94BT6Arabidopsis thalianasp|Q94BT6|ADO1_ARATH Adagio protein 165.500%Swiss-ProtHigh
Q2R2W1Oryza sativa subsp. japonicasp|Q2R2W1|ADO3_ORYSJ Adagio-like protein 374.300%Swiss-ProtHigh
Q5Z8K3Oryza sativa subsp. japonicasp|Q5Z8K3|ADO1_ORYSJ Adagio-like protein 164.500%Swiss-ProtHigh
Q67UX0Oryza sativa subsp. japonicasp|Q67UX0|ADO2_ORYSJ Putative adagio-like protein 264.900%Swiss-ProtHigh

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