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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G208200
Reference: TK1151 Chr: Chr06 Coordinates: 54012286-54017140 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2626 bp · TkA06G208200|TK1151|cDNA

ATAACATCGATTATACTCAACATAAATTTGCTGCCCAATCGCTTTACAATTCCAATAATGACCATAATACCCTTTCATCGAACAACCACAGCTTCTGCCAAAAGAACCCCAACAACGTCTTTGAAAAAAATACCAACTCCATCCCATAATTATAAAATACCATAATTGCCCTCGAAACAGAAAAAGACTGTCAGATTGATCCCTTCCATTCAAGACAGAAACCCATCCAAAATTACAAATTTGCCCTTGCTGCCCCTTAG...

CDS

Download CDS FASTA

1398 bp · TkA06G208200|TK1151|CDS

ATGATGGTGTTCGGTCACTCAAGCACCGGAGGAGGTTTCCTCCCCGCAAAACTACAGGTTTACCCAGTGGACTACGAGGCCGACGTCTCTCAACGCCTCCTTGAAGCTTCGTCCTGTGGCGATCTCAAATCGGCGTTAGACTGCATTGACGATCCCTACGTTGACGTCAACTATCTCGGCGCTGTTTCCTTGAAGGTTCGTATGGCGGAAGTTAACTGCCGCGATGAATCGGAGAATGTGGTGCGATTTGAGTACCAGGA...

Protein

Download Protein FASTA

465 aa · TkA06G208200|TK1151|PROTEIN

MMVFGHSSTGGGFLPAKLQVYPVDYEADVSQRLLEASSCGDLKSALDCIDDPYVDVNYLGAVSLKVRMAEVNCRDESENVVRFEYQDVKTDVTALFIAVHTGNATLVRKLLAGANINGMVQLGAWSWETVSGEEFKVGAGLAEPYGITWCAVEYFEASGTILQMLLQHIPLDTRHNSRTLLHHAVLCGNTGAVKTLINLGADVESVIKTNKGTETRPIHMAARLGFHSIILQLIAAGCDINSRTKNDNETAQMISSKFKQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G208200
TK1151 IDTkA06G208200
OH-1004 IDLXL04_023846
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)76.200
Protein coverage (%)TK1151 97.634 / OH-1004 78.647
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G208200
LocationChr06:54012286-54017140 (-)
DescriptionSimilar to Ank3: Ankyrin-3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023846 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000281 mitotic cytokinesis Biological Process
GO:0006887 exocytosis Biological Process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process
GO:0007009 plasma membrane organization Biological Process
GO:0007010 cytoskeleton organization Biological Process
GO:0007165 signal transduction Biological Process
GO:0007528 neuromuscular junction development Biological Process
GO:0010628 positive regulation of gene expression Biological Process
GO:0010650 positive regulation of cell communication by electrical coupling Biological Process
GO:0010765 positive regulation of sodium ion transport Biological Process
GO:0010960 magnesium ion homeostasis Biological Process
GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity Biological Process
KEGG gene cross-reference
hsa:286
mmu:11735
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.596
Rank 1 · TkA06G208200 · TK1151
Nucleus0.437
Rank 2 · TkA06G208200 · TK1151
Mitochondrion0.075
Rank 3 · TkA06G208200 · TK1151
Cell membrane0.043
Rank 4 · TkA06G208200 · TK1151
Endoplasmic reticulum0.034
Rank 5 · TkA06G208200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00023Ank66-75 aa
PF12796Ank_290-117 aa
PF13637Ank_490-111 aa
PF13857Ank_592-115 aa
PF00023Ank93-117 aa
PF13606Ank_393-117 aa
PF23745ANK_LRRK293-112 aa
PF12796Ank_2159-204 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G208200PF00023Ank66754.1e-36121.7
TkA06G208200PF12796Ank_2901171.3e-39135.3
TkA06G208200PF13637Ank_4901113.7e-2588.1
TkA06G208200PF13857Ank_5921151.1e-2693.3
TkA06G208200PF00023Ank931174.1e-36121.7
TkA06G208200PF13606Ank_3931171e-2587.3
TkA06G208200PF23745ANK_LRRK2931120.02215.4
TkA06G208200PF12796Ank_21592041.3e-39135.3
TkA06G208200PF13606Ank_31601681e-2587.3
TkA06G208200PF00023Ank1611674.1e-36121.7
TkA06G208200PF13637Ank_41621973.7e-2588.1
TkA06G208200PF13857Ank_51662031.1e-2693.3
TkA06G208200PF23745ANK_LRRK21772100.02215.4
TkA06G208200PF00023Ank1782044.1e-36121.7
TkA06G208200PF13606Ank_31782031e-2587.3
TkA06G208200PF13637Ank_41922313.7e-2588.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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