TkA06G197760 | RubberDandelionOmics

Gene overview

TkA06G197760

Reference: TK1151 Chr: Chr06 Coordinates: 51449400-51453250 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2289 bp · TkA06G197760|TK1151|cDNA

ATGCTTACCAGAAAACAGAAGAAAGCCGCCGGAAACAAGCTGCAGGTCGCCGGAAGGAACAGGCTGCCGGTCCAAAAATCTGACGAGAAAGAAGGCTGGGCGTCGGCCTTCTGTGACAGCAGCTACTCGACGAGGAGGGGGAAGGAAAGAGCCAAGGAGATCACCGGGATGCTAGAGCAGGAAGGTCTAATTGAACTGAGCCCTAAGATTGCTCTAAAGAATGTTCTTCATGTGCCGGATTTCAAATGCAATTTGCTGTC...

CDS

Download CDS FASTA

2289 bp · TkA06G197760|TK1151|CDS

ATGCTTACCAGAAAACAGAAGAAAGCCGCCGGAAACAAGCTGCAGGTCGCCGGAAGGAACAGGCTGCCGGTCCAAAAATCTGACGAGAAAGAAGGCTGGGCGTCGGCCTTCTGTGACAGCAGCTACTCGACGAGGAGGGGGAAGGAAAGAGCCAAGGAGATCACCGGGATGCTAGAGCAGGAAGGTCTAATTGAACTGAGCCCTAAGATTGCTCTAAAGAATGTTCTTCATGTGCCGGATTTCAAATGCAATTTGCTGTC...

Protein

Download Protein FASTA

762 aa · TkA06G197760|TK1151|PROTEIN

MLTRKQKKAAGNKLQVAGRNRLPVQKSDEKEGWASAFCDSSYSTRRGKERAKEITGMLEQEGLIELSPKIALKNVLHVPDFKCNLLSVKSLSITAQIAFHFYPTYCLLQDLATKRIVAKGKILGKLYVLDNDSLFVDLSCNVPPIPKGMNNQSCVKIFSPQKESYTIKQFHTLHNRMEEWKGQKAYKLYDLQEKKIIMSRDVIFYEEVFPYKNPQFQITKEPVMMPNSSHNENIPEIPFQVDHNDFIPTDVFNPDDVDLH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G197760`
TK1151 ID	TkA06G197760
OH-1004 ID	LXL04_025587
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	54.400
Protein coverage (%)	TK1151 91.995 / OH-1004 46.483 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G197760

Location Chr06:51449400-51453250 (+)

Description Similar to PAPP5: Serine/threonine-protein phosphatase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02960`	Retrovirus-related Pol polyprotein from transposon RE2.	No verified direct reference in this release
`UniProt: Q94HW2`	Retrovirus-related Pol polyprotein from transposon RE1.	No verified direct reference in this release
`UniProt: P92519`	Uncharacterized mitochondrial protein AtMg00810.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025587 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001933 negative regulation of protein phosphorylation Biological Process

GO:0006470 protein dephosphorylation Biological Process

GO:0006913 nucleocytoplasmic transport Biological Process

GO:0010017 red or far-red light signaling pathway Biological Process

GO:0010019 chloroplast-nucleus signaling pathway Biological Process

GO:0010288 response to lead ion Biological Process

GO:0043278 response to morphine Biological Process

GO:0043409 negative regulation of MAPK cascade Biological Process

GO:0070262 peptidyl-serine dephosphorylation Biological Process

GO:0070301 cellular response to hydrogen peroxide Biological Process

GO:0071276 cellular response to cadmium ion Biological Process

GO:1902325 negative regulation of chlorophyll biosynthetic process Biological Process

KEGG gene cross-reference

ath:AT2G42810

mmu:19060

rno:65179

sly:543849

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.523

Rank 1 · TkA06G197760 · TK1151

Nucleus0.483

Rank 2 · TkA06G197760 · TK1151

Mitochondrion0.099

Rank 3 · TkA06G197760 · TK1151

Peroxisome0.034

Rank 4 · TkA06G197760 · TK1151

Endoplasmic reticulum0.032

Rank 5 · TkA06G197760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22936Pol_BBD69-91 aa

PF25597SH3_retrovirus182-214 aa

PF07727RVT_2392-610 aa

PF00078RVT_1464-582 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G197760	`PF22936`	Pol_BBD	69	91	0.00016	22.7
TkA06G197760	`PF25597`	SH3_retrovirus	182	214	3.5e-09	37.0
TkA06G197760	`PF07727`	RVT_2	392	610	1.2e-67	228.8
TkA06G197760	`PF00078`	RVT_1	464	582	0.0015	19.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZT94`	Arabidopsis thaliana	sp\|Q9ZT94\|POLR2_ARATH Retrovirus-related Pol polyprotein from transposon RE2	39.800%	Swiss-Prot	Medium
`Q94HW2`	Arabidopsis thaliana	sp\|Q94HW2\|POLR1_ARATH Retrovirus-related Pol polyprotein from transposon RE1	40.000%	Swiss-Prot	Medium
`P92519`	Arabidopsis thaliana	sp\|P92519\|M810_ARATH Uncharacterized mitochondrial protein AtMg00810	39.400%	Swiss-Prot	Low

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