TkA06G176790 | RubberDandelionOmics

Gene overview

TkA06G176790

Reference: TK1151 Chr: Chr06 Coordinates: 46356754-46361309 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1927 bp · TkA06G176790|TK1151|cDNA

AAAAAGCAACGGATGACACACCACCAACGCATATACATAATTACATAGGGATGTAGACGACAAGCTCCATAACAACATGCAGGCACCTCACCAATATAAAAAACACCATAACTTTCCAACCCTCTCTGCATGTTCGCTTTCTCTCTGCAATCTGCAGCAATATTCTTTCTCGATCTGAAATTTAATGGAGGGACAAAAGCAGGACGATTACTCGGTTACAATACCTCTACTGCTTGCCAATGGAAAGGAAACAAAGGCGG...

CDS

Download CDS FASTA

1296 bp · TkA06G176790|TK1151|CDS

ATGGAGGGACAAAAGCAGGACGATTACTCGGTTACAATACCTCTACTGCTTGCCAATGGAAAGGAAACAAAGGCGGATGACCAGCAAATCGCCGCCGCCGCCGCCGCCGCCGCCACTACCGGCACTTCCTCCTTCTTCAACACATGTTTCAATGGTCTCAATGCTCTATCAGGAGTTGGGATTTTATCAGTTCCATACGCGTTAGCATCAGGAGGGTGGTTAAGTTTAACATTACTTTTCACAATAGCGTTCTCGACTTT...

Protein

Download Protein FASTA

431 aa · TkA06G176790|TK1151|PROTEIN

MEGQKQDDYSVTIPLLLANGKETKADDQQIAAAAAAAATTGTSSFFNTCFNGLNALSGVGILSVPYALASGGWLSLTLLFTIAFSTFYTGLLIQRCMNKDPTIKNYPDIGHRAFGKTGRIIVSVTMNIELYLVATGFLILEGDNLSNLLPDVGLDFYGVHLGGKESFVVIVAAIILPTIWLNNMSILSYISASGVLASLIILGSILWVGEFDGVGFREKGKVVNWKGMPSAISLYAFCYCAHPVFPTLYTSMKDRRQFKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G176790`
TK1151 ID	TkA06G176790
OH-1004 ID	LXL04_024100
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G176790

Location Chr06:46356754-46361309 (+)

Description Similar to AVT1J: Amino acid transporter AVT1J

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15240`	Amino acid transporter AVT1J.	No verified direct reference in this release
`At3g28960`	Amino acid transporter AVT1I.	No verified direct reference in this release
`At3g54830`	Amino acid transporter AVT1B.	No verified direct reference in this release
`At2g39130`	Amino acid transporter AVT1C.	No verified direct reference in this release
`At2g41190`	Amino acid transporter AVT1A.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024100 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0031090 organelle membrane Cellular Component

GO:0015171 amino acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G39130

ath:AT2G41190

ath:AT3G28960

ath:AT3G54830

ath:AT5G15240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.457

Rank 1 · TkA06G176790 · TK1151

Lysosome / Vacuole0.323

Rank 2 · TkA06G176790 · TK1151

Endoplasmic reticulum0.116

Rank 3 · TkA06G176790 · TK1151

Cytoplasm0.101

Rank 4 · TkA06G176790 · TK1151

Golgi apparatus0.067

Rank 5 · TkA06G176790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01490Aa_trans42-423 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G176790	`PF01490`	Aa_trans	42	423	7.9e-66	223.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LXF8`	Arabidopsis thaliana	sp\|Q9LXF8\|AVT1J_ARATH Amino acid transporter AVT1J	63.800%	Swiss-Prot	High
`F4J1Q9`	Arabidopsis thaliana	sp\|F4J1Q9\|AVT1I_ARATH Amino acid transporter AVT1I	62.400%	Swiss-Prot	High
`F4JE35`	Arabidopsis thaliana	sp\|F4JE35\|AVT1B_ARATH Amino acid transporter AVT1B	46.300%	Swiss-Prot	Medium
`F4IUW3`	Arabidopsis thaliana	sp\|F4IUW3\|AVT1C_ARATH Amino acid transporter AVT1C	43.900%	Swiss-Prot	Medium
`O80668`	Arabidopsis thaliana	sp\|O80668\|AVT1A_ARATH Amino acid transporter AVT1A	42.800%	Swiss-Prot	Medium

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