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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G172590
Reference: TK1151 Chr: Chr06 Coordinates: 45311234-45323614 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6108 bp · TkA06G172590|TK1151|cDNA

AAAGAAGTCGTGTGAGATCAAATATTTTCTTTGCCTTTCAAACTGCCCTTAGCCCCAATTCTTCACTATTTCTTCTCCACGGCTCAGACTGAGCAATTGAACTCCGGTCTTCCAAATTTCACCAGAAAACCCTAATTTCCAGCGATTAAACCCTTGATGAACTTGTTTGCACATTTTTTTCCGCGGAGAAACTAATTTCAATGTCGAATTCGCGTGCCGGAGGTGGAGGAGGGATACCTAGAGGTATTGGCCTGGCCAAC...

CDS

Download CDS FASTA

5442 bp · TkA06G172590|TK1151|CDS

ATGTCGAATTCGCGTGCCGGAGGTGGAGGAGGGATACCTAGAGGTATTGGCCTGGCCAACACTGTTCATTCTGAAGTTGCTCCGTGCTTACCGTTGCCGTCGCTGCCGGTCTTCTGCGGCGCCCTTGACCAGGACCTGCGGTTAGTTGACGAGCCTACGGGCTCGGCCAGACAGTCCAACCGCAGTGATGTTGCCGATCAGGCTAGCAAGATATCTAAACTTCTCCAGGCTACTGATGTGTCTTACCTGAATCTTAGAAA...

Protein

Download Protein FASTA

1813 aa · TkA06G172590|TK1151|PROTEIN

MSNSRAGGGGGIPRGIGLANTVHSEVAPCLPLPSLPVFCGALDQDLRLVDEPTGSARQSNRSDVADQASKISKLLQATDVSYLNLRKEVTKSSYGREEHLDLYDEVLRCNSEAFEPVAPGSTKEQMYNNSVPNNKVPERKLIVKNLSTNNEPVKDKGETQRQHEHDAVTSSSRKPKSKKKTSDDTLPTEPDGSELQDAAVERFCEVLEDLCGKAEISADDREEGESEWLLLPVGNLRTLVKEIMAARTSKILHFVPVGLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G172590
TK1151 IDTkA06G172590
OH-1004 IDLXL04_024148
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G172590
LocationChr06:45311234-45323614 (+)
DescriptionSimilar to SCC2: Sister chromatid cohesion protein SCC2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g15540 Essential protein required for cell fate determination during embryogenesis.
The plant adherin AtSCC2 is required for embryogenesis and sister-chromatid cohesion during meiosis in Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2009.03845.x
Cohesin gene defects may impair sister chromatid alignment and genome stability in Arabidopsis thaliana.2009 · DOI: 10.1007/s00412-009-0220-x
The Arabidopsis homolog of Scc4/MAU2 is essential for embryogenesis.2017 · DOI: 10.1242/jcs.196865

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024148 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000070 mitotic sister chromatid segregation Biological Process
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007059 chromosome segregation Biological Process
GO:0007062 sister chromatid cohesion Biological Process
GO:0007064 mitotic sister chromatid cohesion Biological Process
GO:0008104 intracellular protein localization Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010468 regulation of gene expression Biological Process
KEGG gene cross-reference
ath:AT5G15540
dre:794108
hsa:25836
mmu:71175
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.918
Rank 1 · TkA06G172590 · TK1151
Cytoplasm0.142
Rank 2 · TkA06G172590 · TK1151
Cell membrane0.029
Rank 3 · TkA06G172590 · TK1151
Golgi apparatus0.018
Rank 4 · TkA06G172590 · TK1151
Endoplasmic reticulum0.016
Rank 5 · TkA06G172590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22928INTS1_R4284-314 aa
PF12717Cnd1288-343 aa
PF11596DUF3246357-380 aa
PF23048SH3-A_UBE2O359-401 aa
PF23227HEAT_MROH2B_C541-589 aa
PF20168PDS5580-643 aa
PF13513HEAT_EZ610-637 aa
PF02985HEAT618-639 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G172590PF22928INTS1_R42843140.002218.6
TkA06G172590PF12717Cnd12883433e-0628.1
TkA06G172590PF11596DUF32463573803.27.9
TkA06G172590PF23048SH3-A_UBE2O3594010.5811.7
TkA06G172590PF23227HEAT_MROH2B_C5415890.08712.8
TkA06G172590PF20168PDS55806434.6e-0832.1
TkA06G172590PF13513HEAT_EZ6106370.09514.0
TkA06G172590PF02985HEAT6186390.0004820.8
TkA06G172590PF23227HEAT_MROH2B_C6196430.08712.8
TkA06G172590PF00628PHD6757195.5e-0627.0
TkA06G172590PF27108PHD_Pygo6757232.68.9
TkA06G172590PF13831PHD_26907190.001318.9
TkA06G172590PF12717Cnd18418793e-0628.1
TkA06G172590PF20168PDS584410034.6e-0832.1
TkA06G172590PF25786HEAT_GCN1_C8469070.005717.4
TkA06G172590PF02985HEAT8498770.0004820.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
A5HEI1Arabidopsis thalianasp|A5HEI1|SCC2_ARATH Sister chromatid cohesion protein SCC257.300%Swiss-ProtHigh

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